Wall clock time and date at job start Sun Mar 29 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99846 * 2 1 4 4 C 1.52998 * 109.47512 * 66.04785 * 3 2 1 5 5 C 1.50703 * 109.47418 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99577 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99788 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00586 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99730 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46923 * 59.99701 * 9 7 5 11 11 H 1.48499 * 109.47004 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46773 * 299.99808 * 9 7 5 13 13 C 1.46900 * 110.99946 * 236.04320 * 2 1 3 14 14 C 1.52995 * 109.47169 * 293.95506 * 13 2 1 15 15 C 1.53006 * 113.00028 * 309.66443 * 14 13 2 16 16 C 1.54033 * 113.92659 * 81.59951 * 14 13 2 17 17 O 1.44180 * 85.51695 * 136.81660 * 16 14 13 18 18 C 1.44179 * 93.34172 * 335.80744 * 17 16 14 19 19 H 1.09004 * 109.47315 * 183.95575 * 1 2 3 20 20 H 1.09001 * 109.46949 * 303.95243 * 1 2 3 21 21 H 1.09001 * 109.47396 * 63.95403 * 1 2 3 22 22 H 1.09005 * 109.47281 * 186.04872 * 3 2 1 23 23 H 1.08995 * 109.47344 * 306.04183 * 3 2 1 24 24 H 1.09006 * 109.46573 * 299.99898 * 4 3 2 25 25 H 1.08995 * 109.47308 * 59.99375 * 4 3 2 26 26 H 0.97001 * 120.00164 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.46558 * 173.95042 * 13 2 1 28 28 H 1.08994 * 109.46855 * 53.95831 * 13 2 1 29 29 H 1.08998 * 109.47216 * 297.84770 * 15 14 13 30 30 H 1.09002 * 109.46563 * 57.84001 * 15 14 13 31 31 H 1.08994 * 109.47220 * 177.84089 * 15 14 13 32 32 H 1.09003 * 113.86206 * 250.96180 * 16 14 13 33 33 H 1.08990 * 113.86508 * 22.67181 * 16 14 13 34 34 H 1.08993 * 113.86384 * 270.04716 * 18 17 16 35 35 H 1.08999 * 113.98278 * 138.35160 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1710 3.4646 1.3179 6 1 2.7190 3.8326 0.4632 7 6 1.9658 4.2818 2.4093 8 7 1.2989 3.8335 3.4504 9 14 2.6352 6.0258 2.4093 10 1 2.0430 6.7832 1.2775 11 1 2.2818 6.6917 3.6887 12 1 4.1123 5.9890 2.2613 13 6 1.9954 -0.7660 -1.1376 14 6 1.6314 -2.2426 -0.9703 15 6 1.9968 -2.7959 0.4086 16 6 0.1989 -2.5876 -1.4193 17 8 0.7925 -3.7489 -2.0340 18 6 2.0919 -3.1331 -2.1398 19 1 -0.3634 -1.0252 0.0709 20 1 -0.3633 0.5740 0.8525 21 1 -0.3634 0.4512 -0.9233 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9273 -0.8309 24 1 0.5471 2.0845 1.4264 25 1 2.0657 1.5016 2.1491 26 1 1.1542 4.4086 4.2181 27 1 3.0797 -0.6610 -1.1756 28 1 1.5611 -0.3873 -2.0627 29 1 3.0759 -2.7352 0.5502 30 1 1.4958 -2.2104 1.1795 31 1 1.6792 -3.8362 0.4786 32 1 -0.4769 -2.8211 -0.5966 33 1 -0.2227 -1.8787 -2.1317 34 1 2.2482 -2.5906 -3.0721 35 1 2.9188 -3.7975 -1.8891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599571285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:54 Heat of formation + Delta-G solvation = -37.033022 kcal Electronic energy + Delta-G solvation = -14621.236153 eV Core-core repulsion = 12233.598693 eV Total energy + Delta-G solvation = -2387.637460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.74326 -38.42921 -35.26554 -33.36070 -31.15978 -28.61922 -27.67176 -27.11547 -26.47887 -23.84703 -21.55136 -19.74085 -18.58621 -17.23058 -17.03847 -16.88847 -16.42552 -16.13142 -15.64602 -14.77100 -14.48426 -14.35346 -14.12533 -13.30193 -13.23013 -13.07336 -12.92843 -12.74317 -12.54129 -12.47002 -12.36330 -11.79262 -11.69111 -11.36121 -11.28604 -10.99569 -10.54577 -10.51436 -9.14976 -8.19063 -6.30376 1.40813 1.43782 1.51731 2.40877 2.76332 2.98558 3.14423 3.40070 3.87930 4.07843 4.24270 4.31300 4.40030 4.45152 4.55833 4.59607 4.64721 4.77420 4.82334 4.96546 5.01569 5.02834 5.05874 5.13526 5.22220 5.25719 5.47064 5.48368 5.68607 5.79696 6.10893 6.31583 6.34890 6.87120 7.38779 8.92798 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.072522 B = 0.005613 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.998860 B = 4987.309201 C = 5062.294807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.079 3.921 4 C 0.036 3.964 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.063 3.937 14 C -0.119 4.119 15 C -0.113 4.113 16 C 0.039 3.961 17 O -0.403 6.403 18 C 0.046 3.954 19 H 0.085 0.915 20 H 0.048 0.952 21 H 0.025 0.975 22 H 0.063 0.937 23 H 0.019 0.981 24 H -0.005 1.005 25 H -0.008 1.008 26 H 0.264 0.736 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -11.350 -10.210 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.048 4.048 4 C -0.001 4.001 5 C -0.584 4.584 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.065 4.065 14 C -0.119 4.119 15 C -0.170 4.170 16 C -0.037 4.037 17 O -0.323 6.323 18 C -0.031 4.031 19 H 0.103 0.897 20 H 0.067 0.933 21 H 0.044 0.956 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.013 0.987 25 H 0.010 0.990 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.644 -11.790 -9.687 15.272 hybrid contribution -0.096 1.606 -0.250 1.628 sum 0.547 -10.184 -9.937 14.239 Atomic orbital electron populations 1.22493 0.87679 1.02226 1.00038 1.61975 1.08142 1.13974 1.42922 1.21976 0.98695 0.86866 0.97306 1.18920 0.95042 0.93567 0.92606 1.21617 1.35426 0.99092 1.02312 0.92237 1.25944 0.95404 1.03184 0.95034 1.70099 1.42000 1.38313 1.06773 0.85506 0.79111 0.78941 0.77503 1.19213 1.20858 1.19134 1.22193 1.00562 0.92436 0.91282 1.23630 0.95942 0.94625 0.97742 1.21354 1.01845 0.99784 0.94056 1.24313 0.95978 0.86746 0.96645 1.89624 1.24526 1.34452 1.83665 1.24199 0.87262 0.94253 0.97363 0.89680 0.93288 0.95616 0.91876 0.96281 0.98686 0.98972 0.92776 0.90292 0.94234 0.92011 0.92363 0.92216 0.88735 0.89695 0.88909 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 8.75 127.69 1.12 1.88 16 2 N -0.55 -18.82 3.86 -922.47 -3.56 -22.38 16 3 C 0.08 3.29 4.90 86.30 0.42 3.71 16 4 C 0.04 1.92 4.90 29.85 0.15 2.07 16 5 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 0.13 5.46 84.65 0.46 0.60 16 8 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 9 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 C 0.06 1.67 4.56 86.30 0.39 2.06 16 14 C -0.12 -2.71 0.85 -51.48 -0.04 -2.75 16 15 C -0.11 -2.73 8.87 71.98 0.64 -2.09 16 16 C 0.04 0.88 6.18 72.27 0.45 1.32 16 17 O -0.40 -9.90 12.37 -148.98 -1.84 -11.74 16 18 C 0.05 0.90 8.36 72.28 0.60 1.50 16 19 H 0.08 2.27 5.09 -2.38 -0.01 2.26 16 20 H 0.05 1.86 6.30 -2.39 -0.02 1.85 16 21 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 2.56 7.93 -2.38 -0.02 2.54 16 23 H 0.02 0.78 8.12 -2.39 -0.02 0.77 16 24 H -0.01 -0.29 6.47 -2.38 -0.02 -0.31 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.08 2.03 7.93 -2.38 -0.02 2.01 16 28 H 0.04 0.99 7.97 -2.39 -0.02 0.97 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.65 7.56 -2.39 -0.02 1.63 16 31 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 32 H 0.09 2.01 7.33 -2.39 -0.02 1.99 16 33 H 0.09 1.75 7.99 -2.39 -0.02 1.73 16 34 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.10 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -64.43 279.75 2.36 -62.06 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.04 Total: 5.26 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.42 Total: -22.63 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -3.28 Total: -79.13 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.84 Total: -11.74 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -64.43 2.36 -62.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599571285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.029 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds