Wall clock time and date at job start Sun Mar 29 2020 22:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46855 * 2 1 4 4 C 1.37099 * 119.99729 * 275.68457 * 3 2 1 5 5 H 1.08007 * 119.99788 * 146.56442 * 4 3 2 6 6 C 1.38949 * 120.00482 * 326.57168 * 4 3 2 7 7 N 1.31415 * 119.99569 * 336.16938 * 6 4 3 8 8 Si 1.86793 * 120.00254 * 156.16698 * 6 4 3 9 9 H 1.48498 * 109.47420 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47335 * 120.00217 * 8 6 4 11 11 H 1.48506 * 109.47285 * 239.99715 * 8 6 4 12 12 C 1.34775 * 120.00498 * 95.69240 * 3 2 1 13 13 O 1.21285 * 120.00222 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99536 * 359.97438 * 12 3 2 15 15 H 1.08997 * 112.85035 * 50.33728 * 14 12 3 16 16 C 1.53781 * 113.61139 * 181.53131 * 14 12 3 17 17 C 1.53782 * 87.08109 * 139.98172 * 16 14 12 18 18 H 1.09003 * 113.61500 * 89.11343 * 17 16 14 19 19 O 1.42895 * 113.61736 * 219.93497 * 17 16 14 20 20 C 1.53777 * 113.61780 * 279.13832 * 14 12 3 21 21 H 1.09004 * 109.46601 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47176 * 300.00350 * 1 2 3 23 23 H 1.09000 * 109.46762 * 60.00531 * 1 2 3 24 24 H 1.09000 * 109.46762 * 119.99469 * 2 1 3 25 25 H 1.09000 * 109.47176 * 239.99650 * 2 1 3 26 26 H 0.97001 * 119.99527 * 180.02562 * 7 6 4 27 27 H 1.09002 * 113.61600 * 254.52892 * 16 14 12 28 28 H 1.08993 * 113.61570 * 25.35020 * 16 14 12 29 29 H 0.96699 * 114.00349 * 179.97438 * 19 17 16 30 30 H 1.09009 * 113.61304 * 334.57008 * 20 14 12 31 31 H 1.09004 * 113.61846 * 105.46767 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1359 2.0667 -1.1815 5 1 1.9604 3.1321 -1.2075 6 6 2.4806 1.3908 -2.3456 7 7 3.1347 0.2532 -2.2756 8 14 2.0143 2.0993 -4.0099 9 1 1.2873 3.3796 -3.8168 10 1 3.2438 2.3428 -4.8063 11 1 1.1406 1.1382 -4.7298 12 6 2.3521 1.9781 1.1614 13 8 2.7567 3.1215 1.1613 14 6 2.2224 1.2247 2.4601 15 1 2.6962 0.2436 2.4294 16 6 2.6069 2.0560 3.6955 17 6 1.4134 1.4007 4.4104 18 1 1.6648 0.4670 4.9135 19 8 0.6811 2.3008 5.2444 20 6 0.7894 1.1996 3.0174 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 3.3756 -0.2185 -3.0882 27 1 3.5731 1.7849 4.1208 28 1 2.4946 3.1305 3.5509 29 1 -0.0710 1.8945 5.6964 30 1 0.1779 2.0395 2.6876 31 1 0.2904 0.2381 2.8961 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602080894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:16 Heat of formation + Delta-G solvation = -85.910185 kcal Electronic energy + Delta-G solvation = -14818.846951 eV Core-core repulsion = 12293.256924 eV Total energy + Delta-G solvation = -2525.590027 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.19175 -38.99670 -36.91305 -35.68978 -33.88011 -31.15602 -28.11359 -26.65985 -25.72570 -23.82076 -21.60239 -19.96080 -18.88084 -18.44146 -17.63106 -16.86776 -16.60476 -15.85907 -15.46243 -14.96266 -14.46021 -14.35941 -13.62834 -13.53252 -13.39270 -13.25173 -12.89984 -12.67881 -12.45235 -12.24432 -12.09959 -11.92948 -11.71766 -11.40371 -10.96535 -10.72424 -10.22486 -9.44899 -8.33470 -6.03928 1.33311 1.39440 1.53211 2.03325 2.29152 2.99607 3.02719 3.48053 3.57044 3.75955 3.91808 3.99066 4.26598 4.43093 4.59160 4.69758 4.76692 4.82344 4.89971 4.99751 5.05522 5.17815 5.37024 5.42686 5.46028 5.64738 6.20511 6.55734 7.01642 7.19396 7.50842 8.10599 8.66376 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051189 B = 0.008750 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.860217 B = 3199.214807 C = 3392.882849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.087 3.913 3 N -0.450 5.450 4 C -0.345 4.345 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.884 5.884 8 Si 0.977 3.023 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.260 1.260 12 C 0.449 3.551 13 O -0.639 6.639 14 C -0.128 4.128 15 H 0.127 0.873 16 C -0.118 4.118 17 C 0.098 3.902 18 H 0.126 0.874 19 O -0.579 6.579 20 C -0.141 4.141 21 H 0.084 0.916 22 H 0.056 0.944 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.274 0.726 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.397 0.603 30 H 0.061 0.939 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 -6.753 9.103 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 N -0.168 5.168 4 C -0.473 4.473 5 H 0.075 0.925 6 C -0.197 4.197 7 N -0.522 5.522 8 Si 0.800 3.200 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.185 1.185 12 C 0.239 3.761 13 O -0.527 6.527 14 C -0.149 4.149 15 H 0.145 0.855 16 C -0.156 4.156 17 C 0.040 3.960 18 H 0.143 0.857 19 O -0.388 6.388 20 C -0.179 4.179 21 H 0.103 0.897 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.247 0.753 30 H 0.080 0.920 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.796 -5.958 8.730 12.054 hybrid contribution -0.236 0.276 -1.016 1.079 sum -6.032 -5.682 7.715 11.322 Atomic orbital electron populations 1.22082 0.95524 1.02215 1.01202 1.21803 0.94458 0.83349 1.03951 1.43815 1.55096 1.13244 1.04596 1.19357 1.48236 0.93588 0.86134 0.92516 1.25992 0.94176 0.96933 1.02590 1.69956 1.33858 1.17947 1.30392 0.85150 0.78413 0.78648 0.77757 1.19984 1.20314 1.18492 1.21123 0.80219 0.87823 0.86914 1.90453 1.52536 1.21648 1.88047 1.22431 1.00899 1.00435 0.91103 0.85533 1.22911 0.99082 0.99733 0.93894 1.23344 0.91208 0.93310 0.88177 0.85703 1.86517 1.47425 1.40596 1.64226 1.23578 0.94171 1.03145 0.96999 0.89711 0.92455 0.94796 0.90548 0.89289 0.91591 0.89492 0.92179 0.75295 0.92006 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 10.20 71.98 0.73 -4.58 16 2 C 0.09 3.71 5.61 86.38 0.48 4.19 16 3 N -0.45 -23.59 2.56 -635.53 -1.63 -25.21 16 4 C -0.35 -20.25 8.94 84.04 0.75 -19.50 16 5 H 0.06 3.63 7.71 -2.91 -0.02 3.61 16 6 C 0.01 0.31 4.99 84.93 0.42 0.73 16 7 N -0.88 -47.82 11.27 21.66 0.24 -47.57 16 8 Si 0.98 43.04 29.61 68.60 2.03 45.07 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 12 C 0.45 23.15 7.15 87.66 0.63 23.78 16 13 O -0.64 -39.18 15.73 -3.04 -0.05 -39.23 16 14 C -0.13 -4.64 2.86 -11.01 -0.03 -4.67 16 15 H 0.13 3.96 7.03 -2.39 -0.02 3.94 16 16 C -0.12 -4.03 7.23 31.12 0.22 -3.80 16 17 C 0.10 2.42 5.21 31.18 0.16 2.58 16 18 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 19 O -0.58 -14.45 13.68 -148.98 -2.04 -16.48 16 20 C -0.14 -4.06 6.02 31.18 0.19 -3.87 16 21 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.06 1.84 6.06 -2.39 -0.01 1.83 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 2.74 6.04 -2.39 -0.01 2.73 16 25 H 0.09 4.25 5.32 -2.39 -0.01 4.24 16 26 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 28 H 0.06 2.54 7.45 -2.39 -0.02 2.52 16 29 H 0.40 5.35 9.12 -74.06 -0.68 4.68 16 30 H 0.06 2.14 8.09 -2.38 -0.02 2.12 16 31 H 0.10 2.32 7.59 -2.38 -0.02 2.30 16 Total: -1.00 -74.86 257.66 2.59 -72.27 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.46 Total: 16.30 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.56 Total: -5.14 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.38 Total: -72.79 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -2.09 Total: -55.71 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -74.86 2.59 -72.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.643 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds