Wall clock time and date at job start Sun Mar 29 2020 22:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.50703 * 109.47064 * 90.00051 * 3 2 1 5 5 H 1.07996 * 119.99751 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00001 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.21291 * 119.99579 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00055 * 0.02562 * 12 2 1 15 15 H 1.08996 * 112.85318 * 48.79883 * 14 12 2 16 16 C 1.53785 * 113.61073 * 180.02562 * 14 12 2 17 17 C 1.53781 * 87.08004 * 139.97943 * 16 14 12 18 18 H 1.09005 * 113.61690 * 89.11149 * 17 16 14 19 19 O 1.42894 * 113.61380 * 219.93209 * 17 16 14 20 20 C 1.53787 * 113.60923 * 277.49383 * 14 12 2 21 21 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 22 22 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 23 23 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 24 24 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 25 25 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 26 26 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 27 27 H 1.09009 * 113.60698 * 254.52577 * 16 14 12 28 28 H 1.08996 * 113.61528 * 25.34541 * 16 14 12 29 29 H 0.96698 * 114.00430 * 180.02562 * 19 17 16 30 30 H 1.08995 * 113.61518 * 334.56468 * 20 14 12 31 31 H 1.08998 * 113.60950 * 105.47518 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 1 2.0973 1.0962 2.2417 6 6 3.1258 2.8781 1.6728 7 7 3.5531 3.6183 0.6732 8 14 3.4377 3.4170 3.4340 9 1 4.2411 2.3823 4.1333 10 1 4.1800 4.7031 3.4339 11 1 2.1404 3.5937 4.1346 12 6 2.1388 -1.1672 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.6011 -2.5082 -0.7555 16 6 2.2978 -3.7102 0.0018 17 6 1.3038 -4.3445 0.9889 18 1 0.4965 -4.8932 0.5037 19 8 1.9317 -5.0900 2.0338 20 6 0.9178 -2.9135 1.3975 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 3.1498 1.1385 -0.5138 25 1 1.6083 2.0285 -0.5138 26 1 4.0292 4.4446 0.8504 27 1 2.3430 -4.2202 -0.9606 28 1 3.2831 -3.5260 0.4300 29 1 1.3116 -5.4918 2.6577 30 1 1.5255 -2.5120 2.2084 31 1 -0.1514 -2.7801 1.5623 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602080963.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:10 Heat of formation + Delta-G solvation = -66.002926 kcal Electronic energy + Delta-G solvation = -14445.427846 eV Core-core repulsion = 11920.701062 eV Total energy + Delta-G solvation = -2524.726784 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.96019 -37.71070 -34.86477 -34.60130 -32.53890 -28.14269 -26.19580 -25.62581 -25.06580 -22.52524 -19.88384 -18.54141 -17.40964 -16.47757 -16.19156 -15.60565 -14.98385 -14.45291 -14.20298 -13.70286 -13.10867 -12.40527 -12.29414 -12.10516 -12.02185 -11.75117 -11.46755 -11.10316 -10.89109 -10.88152 -10.52772 -10.43582 -10.13670 -9.85342 -9.61568 -8.79336 -8.41457 -7.60587 -6.02317 -4.07162 3.32865 3.37366 3.38398 3.44386 3.91322 4.33860 4.47655 4.58142 4.76804 4.89906 4.91506 5.30006 5.39290 5.48474 5.63263 5.79520 5.88092 5.94421 6.09186 6.17994 6.23172 6.48449 7.09021 7.46739 7.57573 7.64165 7.94186 8.25749 8.46409 8.92387 9.14270 9.57889 11.05757 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037988 B = 0.007957 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.888854 B = 3518.213639 C = 3784.359428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.602 5.602 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.515 3.485 13 O -0.540 6.540 14 C -0.136 4.136 15 H 0.107 0.893 16 C -0.106 4.106 17 C 0.075 3.925 18 H 0.081 0.919 19 O -0.558 6.558 20 C -0.149 4.149 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.374 0.626 30 H 0.095 0.905 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 -12.774 -0.324 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.333 5.333 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.301 3.699 13 O -0.417 6.417 14 C -0.158 4.158 15 H 0.125 0.875 16 C -0.144 4.144 17 C 0.016 3.984 18 H 0.099 0.901 19 O -0.362 6.362 20 C -0.188 4.188 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.220 0.780 30 H 0.114 0.886 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.309 -12.363 -0.695 14.912 hybrid contribution -0.535 0.364 1.213 1.374 sum -8.844 -11.999 0.518 14.915 Atomic orbital electron populations 1.21634 0.81582 1.02527 1.00264 1.48128 1.06115 1.07801 1.71305 1.19286 0.92562 0.78179 0.97462 1.21402 1.36571 1.06236 0.92308 0.92561 1.24942 0.95354 0.96394 0.97444 1.69924 1.38401 1.14348 1.30787 0.86557 0.78351 0.77835 0.84682 1.20154 1.21137 1.20269 1.20027 0.87868 0.84715 0.77279 1.90662 1.13902 1.87072 1.50098 1.22494 0.99875 0.94112 0.99308 0.87482 1.22929 0.99669 0.93361 0.98441 1.23377 0.95908 0.89847 0.89264 0.90076 1.86582 1.37428 1.70820 1.41403 1.23578 1.01583 0.96810 0.96787 0.93904 0.92397 0.90882 0.93880 0.95040 0.92664 0.90785 0.87745 0.77953 0.88642 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.10 59.84 0.60 1.96 16 2 N -0.60 -13.12 2.86 -182.95 -0.52 -13.64 16 3 C 0.24 6.57 5.16 -5.19 -0.03 6.54 16 4 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.51 11.07 7.20 -10.99 -0.08 10.99 16 13 O -0.54 -14.17 15.48 5.55 0.09 -14.09 16 14 C -0.14 -2.07 2.79 -90.96 -0.25 -2.32 16 15 H 0.11 1.31 7.85 -51.93 -0.41 0.90 16 16 C -0.11 -1.56 7.24 -25.92 -0.19 -1.75 16 17 C 0.07 0.89 5.21 -25.94 -0.14 0.76 16 18 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 19 O -0.56 -6.96 13.67 -35.23 -0.48 -7.44 16 20 C -0.15 -2.00 6.74 -25.93 -0.17 -2.17 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.76 5.78 -51.93 -0.30 0.46 16 23 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 24 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 25 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 28 H 0.10 1.88 7.43 -51.93 -0.39 1.49 16 29 H 0.37 2.76 9.12 45.56 0.42 3.18 16 30 H 0.10 1.55 8.09 -51.93 -0.42 1.13 16 31 H 0.07 0.78 7.68 -51.93 -0.40 0.39 16 LS Contribution 265.51 15.07 4.00 4.00 Total: -1.00 -34.98 265.51 -5.41 -40.39 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -3.53 Total: -0.16 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.67 Total: 0.07 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.21 Total: -39.99 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.40 Total: -21.53 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.98 -5.41 -40.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080963.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.612 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds