Wall clock time and date at job start Sun Mar 29 2020 22:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99619 * 2 1 4 4 C 1.50703 * 109.47064 * 90.00051 * 3 2 1 5 5 H 1.07996 * 119.99751 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00001 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 C 1.34774 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.21291 * 119.99579 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00055 * 0.02562 * 12 2 1 15 15 H 1.08996 * 112.85318 * 48.79883 * 14 12 2 16 16 C 1.53785 * 113.61073 * 180.02562 * 14 12 2 17 17 C 1.53781 * 87.08004 * 139.97943 * 16 14 12 18 18 H 1.09005 * 113.61690 * 89.11149 * 17 16 14 19 19 O 1.42894 * 113.61380 * 219.93209 * 17 16 14 20 20 C 1.53787 * 113.60923 * 277.49383 * 14 12 2 21 21 H 1.09004 * 109.47335 * 90.00404 * 1 2 3 22 22 H 1.09006 * 109.47349 * 209.99918 * 1 2 3 23 23 H 1.09003 * 109.47665 * 330.00083 * 1 2 3 24 24 H 1.09002 * 109.47068 * 210.00020 * 3 2 1 25 25 H 1.09001 * 109.47372 * 330.00108 * 3 2 1 26 26 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 27 27 H 1.09009 * 113.60698 * 254.52577 * 16 14 12 28 28 H 1.08996 * 113.61528 * 25.34541 * 16 14 12 29 29 H 0.96698 * 114.00430 * 180.02562 * 19 17 16 30 30 H 1.08995 * 113.61518 * 334.56468 * 20 14 12 31 31 H 1.08998 * 113.60950 * 105.47518 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 1 2.0973 1.0962 2.2417 6 6 3.1258 2.8781 1.6728 7 7 3.5531 3.6183 0.6732 8 14 3.4377 3.4170 3.4340 9 1 4.2411 2.3823 4.1333 10 1 4.1800 4.7031 3.4339 11 1 2.1404 3.5937 4.1346 12 6 2.1388 -1.1672 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.6011 -2.5082 -0.7555 16 6 2.2978 -3.7102 0.0018 17 6 1.3038 -4.3445 0.9889 18 1 0.4965 -4.8932 0.5037 19 8 1.9317 -5.0900 2.0338 20 6 0.9178 -2.9135 1.3975 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 3.1498 1.1385 -0.5138 25 1 1.6083 2.0285 -0.5138 26 1 4.0292 4.4446 0.8504 27 1 2.3430 -4.2202 -0.9606 28 1 3.2831 -3.5260 0.4300 29 1 1.3116 -5.4918 2.6577 30 1 1.5255 -2.5120 2.2084 31 1 -0.1514 -2.7801 1.5623 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602080963.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:09 Heat of formation + Delta-G solvation = -93.934939 kcal Electronic energy + Delta-G solvation = -14446.639069 eV Core-core repulsion = 11920.701062 eV Total energy + Delta-G solvation = -2525.938007 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.33766 -39.07789 -36.60633 -35.76783 -34.68803 -30.12276 -27.59946 -26.82549 -26.60606 -24.37004 -21.12380 -19.88545 -18.70708 -18.65192 -17.62344 -17.06431 -16.56852 -16.02300 -15.91584 -14.98697 -14.57804 -14.03683 -13.80134 -13.60264 -13.45291 -13.31117 -13.13997 -12.77145 -12.63692 -12.33704 -12.20680 -12.01864 -11.75724 -11.45919 -10.86029 -10.67307 -10.43773 -9.42987 -8.25175 -6.40739 1.33436 1.38564 1.45809 1.79705 2.29801 2.44574 3.03754 3.36542 3.46974 3.65989 3.83992 3.97361 4.12751 4.45569 4.53671 4.72421 4.75227 4.80472 4.93828 4.95757 5.03286 5.11761 5.19656 5.39478 5.54270 5.83285 6.03328 6.66731 6.78967 7.00641 7.25335 7.48261 8.81780 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037988 B = 0.007957 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.888854 B = 3518.213639 C = 3784.359428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.257 3.743 4 C -0.546 4.546 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.257 1.257 12 C 0.500 3.500 13 O -0.605 6.605 14 C -0.127 4.127 15 H 0.153 0.847 16 C -0.123 4.123 17 C 0.097 3.903 18 H 0.132 0.868 19 O -0.583 6.583 20 C -0.147 4.147 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.064 0.936 24 H -0.006 1.006 25 H 0.025 0.975 26 H 0.268 0.732 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.397 0.603 30 H 0.056 0.944 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 -14.268 0.481 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.135 3.865 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.182 1.182 12 C 0.290 3.710 13 O -0.487 6.487 14 C -0.147 4.147 15 H 0.171 0.829 16 C -0.161 4.161 17 C 0.038 3.962 18 H 0.150 0.850 19 O -0.391 6.391 20 C -0.185 4.185 21 H 0.091 0.909 22 H 0.114 0.886 23 H 0.083 0.917 24 H 0.012 0.988 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.248 0.752 30 H 0.074 0.926 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.110 -13.879 0.119 17.778 hybrid contribution 0.335 0.814 0.920 1.273 sum -10.776 -13.065 1.040 16.967 Atomic orbital electron populations 1.21963 0.77693 1.04032 1.02706 1.48187 1.08545 1.06228 1.71005 1.18757 0.91051 0.80654 0.96004 1.21678 1.37115 1.06597 0.93022 0.93020 1.25899 0.94802 0.96385 1.02190 1.70045 1.38835 1.14791 1.33165 0.85459 0.78970 0.77379 0.78968 1.20541 1.20053 1.18168 1.21293 0.87629 0.86610 0.75485 1.90623 1.17088 1.88179 1.52795 1.22625 1.00308 0.89734 1.02072 0.82933 1.22984 0.98206 0.94329 1.00554 1.23356 0.95278 0.89357 0.88209 0.85046 1.86532 1.39306 1.70960 1.42346 1.23576 1.03166 0.97743 0.94061 0.90891 0.88573 0.91728 0.98822 0.95682 0.92305 0.88585 0.92493 0.75248 0.92569 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.10 127.77 1.29 3.60 16 2 N -0.61 -26.76 2.86 -851.10 -2.43 -29.19 16 3 C 0.26 14.45 5.16 85.63 0.44 14.89 16 4 C -0.55 -32.62 9.39 25.60 0.24 -32.38 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 8 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 C 0.50 21.89 7.20 87.66 0.63 22.52 16 13 O -0.60 -33.78 15.48 -3.06 -0.05 -33.83 16 14 C -0.13 -3.54 2.79 -11.01 -0.03 -3.57 16 15 H 0.15 2.92 7.85 -2.39 -0.02 2.90 16 16 C -0.12 -3.45 7.24 31.12 0.23 -3.23 16 17 C 0.10 1.92 5.21 31.11 0.16 2.09 16 18 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 19 O -0.58 -13.07 13.67 -148.98 -2.04 -15.10 16 20 C -0.15 -3.47 6.74 31.11 0.21 -3.26 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.10 2.10 5.78 -2.38 -0.01 2.09 16 23 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 24 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 25 H 0.03 1.41 8.07 -2.39 -0.02 1.40 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.06 2.15 7.43 -2.39 -0.02 2.13 16 29 H 0.40 4.52 9.12 -74.06 -0.68 3.85 16 30 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 31 H 0.11 1.78 7.68 -2.39 -0.02 1.76 16 Total: -1.00 -82.39 265.51 1.88 -80.51 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.45 Total: 5.45 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.63 Total: 1.49 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -2.15 Total: -86.56 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -2.08 Total: -48.93 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -82.39 1.88 -80.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080963.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.422 kcal (2) G-P(sol) polarization free energy of solvation -82.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds