Wall clock time and date at job start Sun Mar 29 2020 21:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46858 * 2 1 4 4 C 1.50703 * 109.46933 * 119.99905 * 2 1 3 5 5 H 1.07995 * 119.99492 * 120.00572 * 4 2 1 6 6 C 1.37876 * 120.00001 * 300.00009 * 4 2 1 7 7 N 1.31518 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46781 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46979 * 119.99931 * 8 6 4 11 11 H 1.48496 * 109.46874 * 240.00033 * 8 6 4 12 12 N 1.46497 * 109.47088 * 240.00003 * 2 1 3 13 13 C 1.34778 * 120.00235 * 84.99788 * 12 2 1 14 14 O 1.21284 * 119.99699 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00103 * 179.97438 * 13 12 2 16 16 H 1.09002 * 112.84782 * 50.33605 * 15 13 12 17 17 C 1.53786 * 113.61519 * 181.53015 * 15 13 12 18 18 C 1.53783 * 87.08050 * 140.06465 * 17 15 13 19 19 H 1.09005 * 113.60997 * 89.20380 * 18 17 15 20 20 O 1.42901 * 113.61443 * 220.01768 * 18 17 15 21 21 C 1.53781 * 113.61630 * 279.13963 * 15 13 12 22 22 H 1.09002 * 109.47189 * 300.00028 * 1 2 3 23 23 H 1.09003 * 109.47007 * 60.00356 * 1 2 3 24 24 H 1.09005 * 109.46949 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99402 * 179.97438 * 7 6 4 26 26 H 0.97002 * 119.99890 * 264.99876 * 12 2 1 27 27 H 1.08992 * 113.61675 * 254.61723 * 17 15 13 28 28 H 1.09005 * 113.61030 * 25.43373 * 17 15 13 29 29 H 0.96705 * 113.99535 * 180.02562 * 20 18 17 30 30 H 1.08999 * 113.61567 * 334.48200 * 21 15 13 31 31 H 1.08998 * 113.61196 * 105.38554 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.1483 -2.2856 3.6038 10 1 3.1472 -0.1856 4.8161 11 1 1.1677 -1.5865 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7286 -3.5874 16 1 2.1178 -1.6589 -3.7862 17 6 2.7748 0.1848 -4.8184 18 6 4.0831 -0.5572 -5.1384 19 1 3.9430 -1.4399 -5.7625 20 8 5.1250 0.2981 -5.6128 21 6 4.1803 -0.8722 -3.6336 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7089 1.1614 3.4844 26 1 2.2491 -1.6318 -1.1526 27 1 1.9913 0.0281 -5.5597 28 1 2.9173 1.2364 -4.5691 29 1 5.9503 -0.1630 -5.8162 30 1 4.7079 -0.1094 -3.0611 31 1 4.5307 -1.8818 -3.4191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602086189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:58 Heat of formation + Delta-G solvation = -77.231222 kcal Electronic energy + Delta-G solvation = -14252.298406 eV Core-core repulsion = 11727.084727 eV Total energy + Delta-G solvation = -2525.213679 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.87978 -37.73928 -34.98466 -34.46784 -32.31824 -29.06669 -25.63530 -25.55268 -25.18637 -21.39983 -19.77035 -19.15301 -17.98858 -16.70512 -15.73028 -15.52976 -15.12382 -14.35022 -14.17870 -13.49336 -13.08863 -12.47127 -12.38953 -12.10886 -11.73142 -11.46479 -11.06044 -11.00897 -10.90967 -10.68138 -10.46631 -10.28894 -10.23027 -9.88483 -9.02778 -8.89198 -8.54031 -7.87267 -6.11544 -4.20767 3.23717 3.31286 3.33972 3.39622 3.97474 4.30760 4.48241 4.56550 4.73727 4.86591 4.91136 5.20727 5.44965 5.65992 5.77481 5.85421 6.05054 6.14627 6.44680 6.84304 6.98764 7.17216 7.49596 7.58706 7.60748 7.71389 7.93625 8.16632 8.70927 8.80304 9.17869 9.47198 10.94542 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051303 B = 0.006741 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.650395 B = 4152.788758 C = 4454.101761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.707 5.707 13 C 0.512 3.488 14 O -0.554 6.554 15 C -0.139 4.139 16 H 0.109 0.891 17 C -0.105 4.105 18 C 0.074 3.926 19 H 0.082 0.918 20 O -0.558 6.558 21 C -0.151 4.151 22 H 0.090 0.910 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.388 0.612 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.374 0.626 30 H 0.094 0.906 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 -6.618 -11.674 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.296 3.704 14 O -0.433 6.433 15 C -0.160 4.160 16 H 0.127 0.873 17 C -0.143 4.143 18 C 0.015 3.985 19 H 0.100 0.900 20 O -0.363 6.363 21 C -0.189 4.189 22 H 0.108 0.892 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.220 0.780 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.221 0.779 30 H 0.112 0.888 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.404 -5.187 -11.440 13.311 hybrid contribution 0.739 -1.466 0.914 1.879 sum 5.143 -6.653 -10.526 13.473 Atomic orbital electron populations 1.22075 0.98506 0.99056 1.00884 1.18748 0.91023 0.94023 0.80175 0.93439 1.21262 1.32307 1.13159 0.90357 0.92059 1.24903 0.94845 0.94966 0.99087 1.69922 1.35982 1.22475 1.23746 0.86392 0.78600 0.79503 0.82585 1.19767 1.20871 1.20862 1.46509 1.64882 1.13494 1.10577 1.20115 0.78376 0.87366 0.84543 1.90646 1.51328 1.16178 1.85166 1.22519 0.97558 1.00550 0.95392 0.87314 1.22912 0.94775 1.01186 0.95420 1.23448 0.88890 0.93298 0.92836 0.90025 1.86576 1.24352 1.37773 1.87610 1.23619 0.94697 1.02792 0.97764 0.89179 0.96667 0.95508 0.92638 0.77986 0.90760 0.87818 0.77907 0.88750 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.82 2.56 -69.08 -0.18 6.64 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.22 11.32 55.43 0.63 -24.60 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.71 -15.00 5.07 -54.93 -0.28 -15.28 16 13 C 0.51 10.44 7.32 -10.99 -0.08 10.36 16 14 O -0.55 -13.73 15.57 5.55 0.09 -13.65 16 15 C -0.14 -2.02 4.14 -90.96 -0.38 -2.39 16 16 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.11 -1.49 7.23 -25.92 -0.19 -1.67 16 18 C 0.07 0.85 5.22 -25.77 -0.13 0.71 16 19 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 20 O -0.56 -6.67 13.67 -35.23 -0.48 -7.15 16 21 C -0.15 -1.91 7.48 -25.78 -0.19 -2.10 16 22 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.39 7.08 8.54 -40.82 -0.35 6.73 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.78 7.45 -51.93 -0.39 1.39 16 29 H 0.37 2.59 9.12 45.56 0.42 3.01 16 30 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 265.48 15.07 4.00 4.00 Total: -1.00 -32.43 265.48 -5.79 -38.22 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.53 Total: 7.46 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.20 Total: -4.75 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.35 Total: -39.88 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.40 Total: -20.80 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.43 -5.79 -38.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.014 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds