Wall clock time and date at job start Sun Mar 29 2020 21:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08998 * 112.85671 * 48.79915 * 15 13 12 17 17 C 1.53783 * 113.61417 * 179.97438 * 15 13 12 18 18 C 1.53777 * 87.08330 * 139.97615 * 17 15 13 19 19 H 1.09007 * 113.61146 * 89.11590 * 18 17 15 20 20 O 1.42903 * 113.61705 * 219.93388 * 18 17 15 21 21 C 1.53784 * 87.08320 * 334.57014 * 18 17 15 22 22 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 24 24 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 25 25 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 27 27 H 1.08995 * 113.61515 * 254.52902 * 17 15 13 28 28 H 1.09009 * 113.61209 * 25.34982 * 17 15 13 29 29 H 0.96703 * 113.99729 * 179.97438 * 20 18 17 30 30 H 1.08997 * 113.61037 * 270.88259 * 21 18 17 31 31 H 1.08993 * 113.61578 * 139.98201 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8534 1.1571 2.4129 15 6 2.6382 -0.7317 3.5904 16 1 3.5442 -1.3099 3.4090 17 6 2.7227 0.1716 4.8320 18 6 2.1842 -1.0211 5.6395 19 1 2.9654 -1.6798 6.0190 20 8 1.2344 -0.6520 6.6415 21 6 1.5428 -1.5156 4.3323 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7088 1.1614 -3.4844 26 1 2.2490 -1.6319 1.1525 27 1 3.7412 0.4546 5.0976 28 1 2.0417 1.0222 4.8003 29 1 0.8918 -1.3981 7.1524 30 1 0.5383 -1.1272 4.1646 31 1 1.6087 -2.5948 4.1945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602086190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:01 Heat of formation + Delta-G solvation = -77.151842 kcal Electronic energy + Delta-G solvation = -14257.998400 eV Core-core repulsion = 11732.788162 eV Total energy + Delta-G solvation = -2525.210237 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.89770 -37.74826 -34.99132 -34.47260 -32.32007 -29.07073 -25.66523 -25.54114 -25.18863 -21.38922 -19.81199 -19.13199 -17.99585 -16.70455 -15.78207 -15.53752 -15.04369 -14.28487 -14.24629 -13.66834 -12.91797 -12.48535 -12.35967 -12.25801 -11.66012 -11.47949 -11.08942 -11.00460 -10.86720 -10.70661 -10.48238 -10.27519 -10.23137 -9.89886 -9.02866 -8.89391 -8.54122 -7.87368 -6.11529 -4.20807 3.23777 3.31334 3.33972 3.39242 3.97083 4.30474 4.48042 4.56343 4.72732 4.86157 4.90345 5.20687 5.44940 5.65046 5.76860 5.84604 6.03376 6.14014 6.44026 6.84466 6.98885 7.17345 7.49639 7.58447 7.59739 7.71403 7.93624 8.16695 8.70909 8.80280 9.17850 9.47158 10.94564 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066919 B = 0.006349 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.318529 B = 4409.135422 C = 4526.076155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.262 3.738 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.707 5.707 13 C 0.512 3.488 14 O -0.554 6.554 15 C -0.139 4.139 16 H 0.109 0.891 17 C -0.106 4.106 18 C 0.074 3.926 19 H 0.082 0.918 20 O -0.558 6.558 21 C -0.150 4.150 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.090 0.910 25 H 0.264 0.736 26 H 0.388 0.612 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.374 0.626 30 H 0.093 0.907 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -7.262 12.369 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.296 3.704 14 O -0.433 6.433 15 C -0.160 4.160 16 H 0.127 0.873 17 C -0.143 4.143 18 C 0.015 3.985 19 H 0.100 0.900 20 O -0.363 6.363 21 C -0.188 4.188 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.220 0.780 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.221 0.779 30 H 0.112 0.888 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.355 -5.686 11.977 13.466 hybrid contribution 0.333 -1.564 -0.806 1.791 sum 2.688 -7.249 11.171 13.585 Atomic orbital electron populations 1.22074 0.98533 0.99046 1.00877 1.18747 0.91023 0.94007 0.80169 0.93434 1.21260 1.32320 1.13164 0.90350 0.92059 1.24902 0.94834 0.94971 0.99092 1.69916 1.35940 1.22509 1.23759 0.86387 0.78590 0.79499 0.82566 1.19765 1.20880 1.20870 1.46511 1.65031 1.13517 1.10400 1.20108 0.78600 0.87301 0.84385 1.90646 1.51441 1.16144 1.85079 1.22520 1.00263 0.99380 0.93872 0.87267 1.22919 1.02086 0.97540 0.91783 1.23392 0.91025 0.97757 0.86278 0.90015 1.86578 1.61155 1.37343 1.51233 1.23565 0.99376 0.99972 0.95929 0.95522 0.96687 0.89181 0.92634 0.77981 0.90729 0.87803 0.77922 0.88836 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.82 2.56 -69.08 -0.18 6.64 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.71 -15.00 5.07 -54.93 -0.28 -15.28 16 13 C 0.51 10.44 7.32 -10.99 -0.08 10.36 16 14 O -0.55 -13.73 15.56 5.55 0.09 -13.64 16 15 C -0.14 -2.02 4.15 -90.96 -0.38 -2.40 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.11 -1.49 7.24 -25.92 -0.19 -1.68 16 18 C 0.07 0.84 5.21 -25.92 -0.14 0.71 16 19 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 20 O -0.56 -6.59 13.67 -35.23 -0.48 -7.07 16 21 C -0.15 -1.87 7.46 -25.91 -0.19 -2.06 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.39 7.08 8.54 -40.82 -0.35 6.73 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.78 7.43 -51.92 -0.39 1.39 16 29 H 0.37 2.53 9.12 45.56 0.42 2.94 16 30 H 0.09 1.37 8.09 -51.93 -0.42 0.94 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 265.44 15.07 4.00 4.00 Total: -1.00 -32.41 265.44 -5.79 -38.20 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -3.53 Total: 7.37 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.20 Total: -4.72 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.35 Total: -39.86 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.40 Total: -20.71 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.41 -5.79 -38.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.947 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds