Wall clock time and date at job start Sun Mar 29 2020 21:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08998 * 112.85671 * 48.79915 * 15 13 12 17 17 C 1.53783 * 113.61417 * 179.97438 * 15 13 12 18 18 C 1.53777 * 87.08330 * 139.97615 * 17 15 13 19 19 H 1.09007 * 113.61146 * 89.11590 * 18 17 15 20 20 O 1.42903 * 113.61705 * 219.93388 * 18 17 15 21 21 C 1.53784 * 87.08320 * 334.57014 * 18 17 15 22 22 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 24 24 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 25 25 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 27 27 H 1.08995 * 113.61515 * 254.52902 * 17 15 13 28 28 H 1.09009 * 113.61209 * 25.34982 * 17 15 13 29 29 H 0.96703 * 113.99729 * 179.97438 * 20 18 17 30 30 H 1.08997 * 113.61037 * 270.88259 * 21 18 17 31 31 H 1.08993 * 113.61578 * 139.98201 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8534 1.1571 2.4129 15 6 2.6382 -0.7317 3.5904 16 1 3.5442 -1.3099 3.4090 17 6 2.7227 0.1716 4.8320 18 6 2.1842 -1.0211 5.6395 19 1 2.9654 -1.6798 6.0190 20 8 1.2344 -0.6520 6.6415 21 6 1.5428 -1.5156 4.3323 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7088 1.1614 -3.4844 26 1 2.2490 -1.6319 1.1525 27 1 3.7412 0.4546 5.0976 28 1 2.0417 1.0222 4.8003 29 1 0.8918 -1.3981 7.1524 30 1 0.5383 -1.1272 4.1646 31 1 1.6087 -2.5948 4.1945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602086190.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:00 Heat of formation + Delta-G solvation = -103.261462 kcal Electronic energy + Delta-G solvation = -14259.130598 eV Core-core repulsion = 11732.788162 eV Total energy + Delta-G solvation = -2526.342435 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.24443 -39.12240 -36.72697 -35.69848 -34.29750 -31.02756 -27.39590 -26.78176 -26.66377 -23.09394 -21.41711 -20.47874 -19.29220 -18.22322 -17.38017 -17.14672 -16.48359 -15.91970 -15.69930 -15.15067 -14.49404 -14.21294 -13.88177 -13.52831 -13.32421 -13.05739 -12.87285 -12.79782 -12.39655 -12.30528 -12.11749 -12.00001 -11.47803 -11.11447 -10.87710 -10.65065 -10.46376 -9.75815 -8.18697 -6.36847 1.44507 1.45045 1.57669 1.79907 2.35134 2.62595 3.11719 3.42170 3.49347 3.66581 3.85804 4.00356 4.30826 4.55645 4.72451 4.76449 4.82214 4.88344 4.99378 5.06389 5.11572 5.38489 5.42204 5.60677 5.67059 5.90015 6.08187 6.71866 6.97896 7.00221 7.31517 7.58040 8.88184 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066919 B = 0.006349 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.318529 B = 4409.135422 C = 4526.076155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.267 3.733 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.977 3.023 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.608 6.608 15 C -0.131 4.131 16 H 0.149 0.851 17 C -0.121 4.121 18 C 0.094 3.906 19 H 0.127 0.873 20 O -0.582 6.582 21 C -0.146 4.146 22 H 0.042 0.958 23 H 0.007 0.993 24 H 0.066 0.934 25 H 0.265 0.735 26 H 0.406 0.594 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.397 0.603 30 H 0.063 0.937 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -10.204 13.131 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.163 3.837 3 H 0.012 0.988 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.801 3.199 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.350 5.350 13 C 0.291 3.709 14 O -0.490 6.490 15 C -0.152 4.152 16 H 0.167 0.833 17 C -0.159 4.159 18 C 0.036 3.964 19 H 0.145 0.855 20 O -0.390 6.390 21 C -0.184 4.184 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.242 0.758 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.248 0.752 30 H 0.081 0.919 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.670 -8.684 12.779 15.880 hybrid contribution -0.103 -0.579 -0.991 1.152 sum 3.568 -9.263 11.788 15.411 Atomic orbital electron populations 1.21895 0.98490 0.99455 0.99334 1.18350 0.91057 0.91873 0.82378 0.98814 1.21578 1.32518 1.13544 0.90674 0.90617 1.25869 0.94852 0.95593 1.02544 1.70072 1.37113 1.24100 1.24596 0.85229 0.78071 0.78487 0.78115 1.18131 1.20421 1.21002 1.46271 1.65019 1.14257 1.09495 1.21245 0.77206 0.86875 0.85600 1.90622 1.53511 1.18866 1.86002 1.22636 1.02420 0.99738 0.90414 0.83313 1.22975 1.02467 0.97497 0.92993 1.23351 0.91444 0.95965 0.85689 0.85537 1.86526 1.61587 1.39389 1.51547 1.23562 0.97041 1.01600 0.96182 0.93906 0.97375 0.91527 0.92546 0.75847 0.88912 0.92017 0.75240 0.91852 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.26 71.98 0.67 -6.31 16 2 C 0.27 14.27 2.56 44.25 0.11 14.38 16 3 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 4 C -0.55 -29.15 8.73 25.60 0.22 -28.93 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 8 Si 0.98 42.09 29.54 68.60 2.03 44.11 16 9 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.70 -29.67 5.07 -446.09 -2.26 -31.94 16 13 C 0.50 20.71 7.32 87.66 0.64 21.36 16 14 O -0.61 -31.65 15.56 -3.04 -0.05 -31.70 16 15 C -0.13 -3.52 4.15 -11.01 -0.05 -3.57 16 16 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 17 C -0.12 -3.27 7.24 31.12 0.23 -3.05 16 18 C 0.09 1.80 5.21 31.12 0.16 1.96 16 19 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 20 O -0.58 -12.30 13.67 -148.98 -2.04 -14.33 16 21 C -0.15 -3.21 7.46 31.12 0.23 -2.97 16 22 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.07 3.81 6.07 -2.38 -0.01 3.80 16 25 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.41 14.07 8.54 -92.71 -0.79 13.28 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.19 7.43 -2.38 -0.02 2.18 16 29 H 0.40 4.08 9.12 -74.05 -0.68 3.41 16 30 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -73.98 265.44 0.26 -73.72 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.33 Total: 19.68 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 2.67 Total: -6.08 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.02 Total: -85.41 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -2.08 Total: -46.03 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -73.98 0.26 -73.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086190.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.544 kcal (2) G-P(sol) polarization free energy of solvation -73.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds