Wall clock time and date at job start Sun Mar 29 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99913 * 2 1 4 4 H 1.48496 * 109.47382 * 240.00151 * 3 2 1 5 5 H 1.48496 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47158 * 120.00284 * 3 2 1 7 7 C 1.37874 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00055 * 189.37428 * 7 2 1 9 9 C 1.50703 * 119.99982 * 9.10253 * 7 2 1 10 10 C 1.52998 * 115.55061 * 40.36973 * 9 7 2 11 11 N 1.46899 * 109.47514 * 63.74970 * 10 9 7 12 12 C 1.47849 * 110.99680 * 283.78339 * 11 10 9 13 13 C 1.54908 * 104.79112 * 213.63559 * 12 11 10 14 14 C 1.55135 * 101.65603 * 37.06922 * 13 12 11 15 15 H 1.08998 * 110.70647 * 205.95883 * 14 13 12 16 16 F 1.39901 * 110.70197 * 82.72899 * 14 13 12 17 17 C 1.47439 * 110.99831 * 162.94041 * 11 10 9 18 18 C 1.53004 * 117.49835 * 254.65523 * 9 7 2 19 19 C 1.52997 * 60.00175 * 252.51183 * 18 9 7 20 20 H 0.96991 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46776 * 183.75200 * 10 9 7 22 22 H 1.09007 * 109.46907 * 303.74609 * 10 9 7 23 23 H 1.08999 * 110.37576 * 332.46423 * 12 11 10 24 24 H 1.09004 * 110.37150 * 94.80676 * 12 11 10 25 25 H 1.09001 * 110.98961 * 278.97737 * 13 12 11 26 26 H 1.09004 * 111.02079 * 155.17624 * 13 12 11 27 27 H 1.09004 * 109.88644 * 242.65829 * 17 11 10 28 28 H 1.08999 * 109.89231 * 3.85180 * 17 11 10 29 29 H 1.09003 * 117.49724 * 0.02562 * 18 9 7 30 30 H 1.08999 * 117.49413 * 145.01863 * 18 9 7 31 31 H 1.09004 * 117.49849 * 252.51154 * 19 18 9 32 32 H 1.08999 * 117.49734 * 107.49259 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0738 -1.2003 0.1518 9 6 1.2653 -2.4908 -0.2076 10 6 0.1590 -2.4584 -1.2640 11 7 0.7482 -2.1871 -2.5820 12 6 1.1053 -0.7589 -2.7188 13 6 0.8660 -0.4330 -4.2142 14 6 -0.3995 -1.2764 -4.5203 15 1 -0.4461 -1.5312 -5.5790 16 9 -1.5554 -0.5961 -4.1225 17 6 -0.1893 -2.5423 -3.6631 18 6 1.0485 -3.3836 1.0159 19 6 2.0606 -3.7892 -0.0573 20 1 -0.4849 0.8400 0.0004 21 1 -0.3513 -3.4213 -1.2853 22 1 -0.5562 -1.6736 -1.0172 23 1 0.4619 -0.1448 -2.0889 24 1 2.1525 -0.6031 -2.4593 25 1 1.7088 -0.7579 -4.8244 26 1 0.6706 0.6300 -4.3563 27 1 0.2351 -3.3383 -4.2752 28 1 -1.1400 -2.8648 -3.2385 29 1 1.4402 -3.0327 1.9707 30 1 0.1173 -3.9478 1.0686 31 1 1.7954 -4.6204 -0.7107 32 1 3.1186 -3.7055 0.1914 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602840710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:52 Heat of formation + Delta-G solvation = -13.423490 kcal Electronic energy + Delta-G solvation = -15195.877261 eV Core-core repulsion = 12685.803282 eV Total energy + Delta-G solvation = -2510.073979 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.16484 -38.01777 -35.74835 -32.30440 -30.44213 -28.03454 -25.60350 -24.58775 -21.06081 -20.54197 -20.23829 -18.91672 -16.42062 -16.06303 -15.31526 -14.68872 -14.44178 -14.04391 -13.58672 -13.13703 -12.88111 -12.39848 -11.93077 -11.73397 -11.35876 -10.97563 -10.86796 -10.74980 -10.46451 -10.41754 -10.21220 -10.07812 -9.88247 -9.24551 -8.92159 -8.54399 -8.10050 -7.14301 -5.99916 -4.04939 3.25980 3.32763 3.35188 4.35081 4.78452 4.84241 4.99541 5.06939 5.24302 5.44566 5.70883 5.90604 6.02241 6.15898 6.17605 6.28131 6.46893 6.53734 6.69793 6.82853 6.84138 7.01683 7.05416 7.22537 7.33182 7.43758 7.55298 7.90867 8.14539 8.24261 8.49034 8.89950 9.50717 10.96610 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.015866 C = 0.011219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.330572 B = 1764.301959 C = 2495.231690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.472 4.472 8 H 0.058 0.942 9 C 0.063 3.937 10 C 0.079 3.921 11 N -0.513 5.513 12 C 0.045 3.955 13 C -0.163 4.163 14 C 0.065 3.935 15 H 0.083 0.917 16 F -0.211 7.211 17 C 0.019 3.981 18 C -0.204 4.204 19 C -0.200 4.200 20 H 0.262 0.738 21 H 0.028 0.972 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -1.803 -7.089 7.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.062 3.938 10 C -0.048 4.048 11 N -0.237 5.237 12 C -0.082 4.082 13 C -0.202 4.202 14 C 0.028 3.972 15 H 0.101 0.899 16 F -0.192 7.192 17 C -0.110 4.110 18 C -0.242 4.242 19 C -0.237 4.237 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.079 -1.955 -7.095 7.360 hybrid contribution -0.316 1.260 0.150 1.307 sum -0.395 -0.695 -6.945 6.991 Atomic orbital electron populations 1.69846 1.05722 1.26474 1.50009 1.24909 0.94735 0.98724 0.94632 0.86849 0.79986 0.83436 0.78999 1.19742 1.21114 1.20199 1.20508 0.93460 0.89292 1.47729 0.92377 1.18827 0.94485 0.88905 0.91608 1.22060 0.96978 0.99127 0.86645 1.63530 1.37973 1.19737 1.02417 1.23435 1.03698 0.89120 0.91965 1.23467 0.96410 0.99701 1.00611 1.22814 0.82498 0.93184 0.98718 0.89902 1.92802 1.51694 1.81932 1.92804 1.23441 0.96841 0.95976 0.94780 1.22923 0.98615 1.07349 0.95328 1.22751 0.96081 1.01456 1.03435 0.92773 0.95395 0.88830 0.89451 0.89782 0.90141 0.90872 0.90327 0.92422 0.90622 0.92013 0.91519 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.75 9.47 55.43 0.52 -23.22 16 2 C 0.07 1.84 2.94 -17.82 -0.05 1.79 16 3 Si 0.88 20.39 29.55 -169.99 -5.02 15.37 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.47 -12.53 7.34 -34.44 -0.25 -12.79 16 8 H 0.06 1.56 7.83 -52.48 -0.41 1.15 16 9 C 0.06 1.55 1.95 -155.66 -0.30 1.25 16 10 C 0.08 1.88 4.45 -3.83 -0.02 1.87 16 11 N -0.51 -11.09 5.11 -231.25 -1.18 -12.27 16 12 C 0.05 0.99 4.69 -2.30 -0.01 0.98 16 13 C -0.16 -2.85 6.88 -24.60 -0.17 -3.02 16 14 C 0.07 1.09 4.75 -24.91 -0.12 0.97 16 15 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 16 F -0.21 -4.10 17.19 2.25 0.04 -4.06 16 17 C 0.02 0.34 6.65 -2.84 -0.02 0.32 16 18 C -0.20 -4.73 9.93 -26.73 -0.27 -5.00 16 19 C -0.20 -4.49 9.95 -26.73 -0.27 -4.75 16 20 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 21 H 0.03 0.63 7.78 -51.93 -0.40 0.22 16 22 H 0.09 2.48 5.29 -51.92 -0.27 2.21 16 23 H 0.09 2.15 4.67 -51.93 -0.24 1.91 16 24 H 0.08 1.96 7.15 -51.93 -0.37 1.59 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.05 7.42 -51.93 -0.39 0.67 16 29 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 255.75 15.07 3.85 3.85 Total: -1.00 -27.08 255.75 -7.87 -34.95 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.61 Total: 3.77 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.47 Total: -18.39 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.66 Total: -35.49 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.04 Total: -4.06 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.08 -7.87 -34.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602840710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.524 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds