Wall clock time and date at job start Sun Mar 29 2020 22:14:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86797 * 119.99913 * 2 1
4 4 H 1.48496 * 109.47382 * 240.00151 * 3 2 1
5 5 H 1.48496 * 109.47045 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47158 * 120.00284 * 3 2 1
7 7 C 1.37874 * 119.99991 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00055 * 189.37428 * 7 2 1
9 9 C 1.50703 * 119.99982 * 9.10253 * 7 2 1
10 10 C 1.52998 * 115.55061 * 40.36973 * 9 7 2
11 11 N 1.46899 * 109.47514 * 63.74970 * 10 9 7
12 12 C 1.47849 * 110.99680 * 283.78339 * 11 10 9
13 13 C 1.54908 * 104.79112 * 213.63559 * 12 11 10
14 14 C 1.55135 * 101.65603 * 37.06922 * 13 12 11
15 15 H 1.08998 * 110.70647 * 205.95883 * 14 13 12
16 16 F 1.39901 * 110.70197 * 82.72899 * 14 13 12
17 17 C 1.47439 * 110.99831 * 162.94041 * 11 10 9
18 18 C 1.53004 * 117.49835 * 254.65523 * 9 7 2
19 19 C 1.52997 * 60.00175 * 252.51183 * 18 9 7
20 20 H 0.96991 * 119.99839 * 359.97438 * 1 2 3
21 21 H 1.08998 * 109.46776 * 183.75200 * 10 9 7
22 22 H 1.09007 * 109.46907 * 303.74609 * 10 9 7
23 23 H 1.08999 * 110.37576 * 332.46423 * 12 11 10
24 24 H 1.09004 * 110.37150 * 94.80676 * 12 11 10
25 25 H 1.09001 * 110.98961 * 278.97737 * 13 12 11
26 26 H 1.09004 * 111.02079 * 155.17624 * 13 12 11
27 27 H 1.09004 * 109.88644 * 242.65829 * 17 11 10
28 28 H 1.08999 * 109.89231 * 3.85180 * 17 11 10
29 29 H 1.09003 * 117.49724 * 0.02562 * 18 9 7
30 30 H 1.08999 * 117.49413 * 145.01863 * 18 9 7
31 31 H 1.09004 * 117.49849 * 252.51154 * 19 18 9
32 32 H 1.08999 * 117.49734 * 107.49259 * 19 18 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6965 -1.2125
5 1 1.2841 2.7464 0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0738 -1.2003 0.1518
9 6 1.2653 -2.4908 -0.2076
10 6 0.1590 -2.4584 -1.2640
11 7 0.7482 -2.1871 -2.5820
12 6 1.1053 -0.7589 -2.7188
13 6 0.8660 -0.4330 -4.2142
14 6 -0.3995 -1.2764 -4.5203
15 1 -0.4461 -1.5312 -5.5790
16 9 -1.5554 -0.5961 -4.1225
17 6 -0.1893 -2.5423 -3.6631
18 6 1.0485 -3.3836 1.0159
19 6 2.0606 -3.7892 -0.0573
20 1 -0.4849 0.8400 0.0004
21 1 -0.3513 -3.4213 -1.2853
22 1 -0.5562 -1.6736 -1.0172
23 1 0.4619 -0.1448 -2.0889
24 1 2.1525 -0.6031 -2.4593
25 1 1.7088 -0.7579 -4.8244
26 1 0.6706 0.6300 -4.3563
27 1 0.2351 -3.3383 -4.2752
28 1 -1.1400 -2.8648 -3.2385
29 1 1.4402 -3.0327 1.9707
30 1 0.1173 -3.9478 1.0686
31 1 1.7954 -4.6204 -0.7107
32 1 3.1186 -3.7055 0.1914
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602840710.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:14:52
Heat of formation + Delta-G solvation = -29.472274 kcal
Electronic energy + Delta-G solvation = -15196.573189 eV
Core-core repulsion = 12685.803282 eV
Total energy + Delta-G solvation = -2510.769906 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.122 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-48.58064 -39.70339 -37.48261 -34.29229 -32.00747 -29.54806 -27.57868 -26.32523
-22.88509 -22.01065 -21.80638 -20.81376 -18.17828 -17.59254 -16.90113 -16.61255
-15.86995 -15.81607 -15.23920 -14.86454 -14.60375 -13.99073 -13.61486 -13.43470
-13.12920 -12.77856 -12.50892 -12.45778 -12.25874 -12.02525 -11.93485 -11.61839
-11.55572 -11.07946 -10.85495 -10.42620 -9.98418 -8.88926 -7.98406 -6.09987
1.39408 1.42561 1.48243 2.41787 3.01888 3.32564 3.46505 3.62909
3.78536 3.96745 4.07876 4.37164 4.52306 4.60107 4.64187 4.79461
4.84299 4.94174 4.95997 5.01764 5.14314 5.21420 5.31906 5.44444
5.53865 5.60346 5.61069 5.96723 6.42082 6.47623 6.53384 6.88144
7.47833 8.94667
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.024084 B = 0.015866 C = 0.011219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1162.330572 B = 1764.301959 C = 2495.231690
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.044 3.956
3 Si 0.926 3.074
4 H -0.263 1.263
5 H -0.285 1.285
6 H -0.277 1.277
7 C -0.489 4.489
8 H 0.045 0.955
9 C 0.032 3.968
10 C 0.090 3.910
11 N -0.519 5.519
12 C 0.043 3.957
13 C -0.156 4.156
14 C 0.065 3.935
15 H 0.132 0.868
16 F -0.230 7.230
17 C 0.014 3.986
18 C -0.205 4.205
19 C -0.180 4.180
20 H 0.258 0.742
21 H 0.034 0.966
22 H 0.062 0.938
23 H 0.056 0.944
24 H 0.061 0.939
25 H 0.108 0.892
26 H 0.078 0.922
27 H 0.111 0.889
28 H 0.050 0.950
29 H 0.066 0.934
30 H 0.073 0.927
31 H 0.084 0.916
32 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.025 -2.279 -8.779 9.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.155 4.155
3 Si 0.751 3.249
4 H -0.188 1.188
5 H -0.211 1.211
6 H -0.203 1.203
7 C -0.526 4.526
8 H 0.063 0.937
9 C 0.032 3.968
10 C -0.038 4.038
11 N -0.243 5.243
12 C -0.085 4.085
13 C -0.194 4.194
14 C 0.029 3.971
15 H 0.150 0.850
16 F -0.211 7.211
17 C -0.114 4.114
18 C -0.244 4.244
19 C -0.217 4.217
20 H 0.068 0.932
21 H 0.053 0.947
22 H 0.080 0.920
23 H 0.074 0.926
24 H 0.079 0.921
25 H 0.126 0.874
26 H 0.097 0.903
27 H 0.129 0.871
28 H 0.068 0.932
29 H 0.085 0.915
30 H 0.092 0.908
31 H 0.102 0.898
32 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 0.286 -2.440 -8.790 9.127
hybrid contribution -0.420 1.368 0.691 1.590
sum -0.134 -1.071 -8.099 8.171
Atomic orbital electron populations
1.69982 1.06704 1.26614 1.50500 1.25340 0.95163 1.00838 0.94162
0.86128 0.79069 0.80526 0.79136 1.18783 1.21093 1.20262 1.20623
0.92971 0.90677 1.48377 0.93654 1.18994 0.95769 0.89222 0.92849
1.21804 0.95983 0.98214 0.87798 1.63492 1.39023 1.19520 1.02289
1.23233 1.01478 0.89032 0.94750 1.23445 0.97921 1.00422 0.97603
1.23066 0.81251 0.91874 1.00954 0.85050 1.92773 1.52809 1.82344
1.93216 1.23617 0.96054 0.97552 0.94221 1.22915 0.99515 1.07186
0.94751 1.22728 0.95820 1.00517 1.02631 0.93213 0.94714 0.91972
0.92566 0.92068 0.87381 0.90345 0.87147 0.93185 0.91520 0.90831
0.89773 0.90996
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -49.40 9.47 21.45 0.20 -49.20 16
2 C 0.04 2.33 2.94 84.65 0.25 2.57 16
3 Si 0.93 42.11 29.55 68.60 2.03 44.14 16
4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16
5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16
6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16
7 C -0.49 -26.26 7.34 25.60 0.19 -26.07 16
8 H 0.05 2.48 7.83 -2.91 -0.02 2.45 16
9 C 0.03 1.61 1.95 -52.92 -0.10 1.50 16
10 C 0.09 4.27 4.45 86.30 0.38 4.65 16
11 N -0.52 -21.84 5.11 -885.53 -4.53 -26.37 16
12 C 0.04 1.85 4.69 86.77 0.41 2.26 16
13 C -0.16 -5.02 6.88 31.98 0.22 -4.80 16
14 C 0.07 1.97 4.75 31.77 0.15 2.12 16
15 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16
16 F -0.23 -8.55 17.19 44.97 0.77 -7.78 16
17 C 0.01 0.46 6.65 86.65 0.58 1.04 16
18 C -0.21 -9.45 9.93 30.59 0.30 -9.14 16
19 C -0.18 -7.85 9.95 30.59 0.30 -7.54 16
20 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16
21 H 0.03 1.54 7.78 -2.39 -0.02 1.53 16
22 H 0.06 3.37 5.29 -2.38 -0.01 3.36 16
23 H 0.06 2.80 4.67 -2.39 -0.01 2.79 16
24 H 0.06 2.86 7.15 -2.38 -0.02 2.84 16
25 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16
26 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16
27 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16
28 H 0.05 1.74 7.42 -2.39 -0.02 1.73 16
29 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16
30 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16
31 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16
32 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16
Total: -1.00 -58.18 255.75 2.25 -55.93
By element:
Atomic # 1 Polarization: 15.59 SS G_CDS: 1.09 Total: 16.68 kcal
Atomic # 6 Polarization: -36.09 SS G_CDS: 2.68 Total: -33.41 kcal
Atomic # 7 Polarization: -71.24 SS G_CDS: -4.32 Total: -75.57 kcal
Atomic # 9 Polarization: -8.55 SS G_CDS: 0.77 Total: -7.78 kcal
Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal
Total: -58.18 2.25 -55.93 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602840710.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.460 kcal
(2) G-P(sol) polarization free energy of solvation -58.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.933 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.472 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds