Wall clock time and date at job start Sun Mar 29 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99913 * 2 1 4 4 H 1.48496 * 109.47382 * 240.00151 * 3 2 1 5 5 H 1.48496 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47158 * 120.00284 * 3 2 1 7 7 C 1.37874 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00055 * 189.37428 * 7 2 1 9 9 C 1.50703 * 119.99982 * 9.10253 * 7 2 1 10 10 C 1.52998 * 115.55061 * 40.36973 * 9 7 2 11 11 N 1.46899 * 109.47514 * 63.74970 * 10 9 7 12 12 C 1.47849 * 110.99680 * 283.78339 * 11 10 9 13 13 C 1.54908 * 104.79112 * 213.63559 * 12 11 10 14 14 C 1.55135 * 101.65603 * 37.06922 * 13 12 11 15 15 H 1.08998 * 110.70647 * 205.95883 * 14 13 12 16 16 F 1.39901 * 110.70197 * 82.72899 * 14 13 12 17 17 C 1.47439 * 110.99831 * 162.94041 * 11 10 9 18 18 C 1.53004 * 117.49835 * 254.65523 * 9 7 2 19 19 C 1.52997 * 60.00175 * 252.51183 * 18 9 7 20 20 H 0.96991 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46776 * 183.75200 * 10 9 7 22 22 H 1.09007 * 109.46907 * 303.74609 * 10 9 7 23 23 H 1.08999 * 110.37576 * 332.46423 * 12 11 10 24 24 H 1.09004 * 110.37150 * 94.80676 * 12 11 10 25 25 H 1.09001 * 110.98961 * 278.97737 * 13 12 11 26 26 H 1.09004 * 111.02079 * 155.17624 * 13 12 11 27 27 H 1.09004 * 109.88644 * 242.65829 * 17 11 10 28 28 H 1.08999 * 109.89231 * 3.85180 * 17 11 10 29 29 H 1.09003 * 117.49724 * 0.02562 * 18 9 7 30 30 H 1.08999 * 117.49413 * 145.01863 * 18 9 7 31 31 H 1.09004 * 117.49849 * 252.51154 * 19 18 9 32 32 H 1.08999 * 117.49734 * 107.49259 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0738 -1.2003 0.1518 9 6 1.2653 -2.4908 -0.2076 10 6 0.1590 -2.4584 -1.2640 11 7 0.7482 -2.1871 -2.5820 12 6 1.1053 -0.7589 -2.7188 13 6 0.8660 -0.4330 -4.2142 14 6 -0.3995 -1.2764 -4.5203 15 1 -0.4461 -1.5312 -5.5790 16 9 -1.5554 -0.5961 -4.1225 17 6 -0.1893 -2.5423 -3.6631 18 6 1.0485 -3.3836 1.0159 19 6 2.0606 -3.7892 -0.0573 20 1 -0.4849 0.8400 0.0004 21 1 -0.3513 -3.4213 -1.2853 22 1 -0.5562 -1.6736 -1.0172 23 1 0.4619 -0.1448 -2.0889 24 1 2.1525 -0.6031 -2.4593 25 1 1.7088 -0.7579 -4.8244 26 1 0.6706 0.6300 -4.3563 27 1 0.2351 -3.3383 -4.2752 28 1 -1.1400 -2.8648 -3.2385 29 1 1.4402 -3.0327 1.9707 30 1 0.1173 -3.9478 1.0686 31 1 1.7954 -4.6204 -0.7107 32 1 3.1186 -3.7055 0.1914 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602840710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:52 Heat of formation + Delta-G solvation = -29.472274 kcal Electronic energy + Delta-G solvation = -15196.573189 eV Core-core repulsion = 12685.803282 eV Total energy + Delta-G solvation = -2510.769906 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.58064 -39.70339 -37.48261 -34.29229 -32.00747 -29.54806 -27.57868 -26.32523 -22.88509 -22.01065 -21.80638 -20.81376 -18.17828 -17.59254 -16.90113 -16.61255 -15.86995 -15.81607 -15.23920 -14.86454 -14.60375 -13.99073 -13.61486 -13.43470 -13.12920 -12.77856 -12.50892 -12.45778 -12.25874 -12.02525 -11.93485 -11.61839 -11.55572 -11.07946 -10.85495 -10.42620 -9.98418 -8.88926 -7.98406 -6.09987 1.39408 1.42561 1.48243 2.41787 3.01888 3.32564 3.46505 3.62909 3.78536 3.96745 4.07876 4.37164 4.52306 4.60107 4.64187 4.79461 4.84299 4.94174 4.95997 5.01764 5.14314 5.21420 5.31906 5.44444 5.53865 5.60346 5.61069 5.96723 6.42082 6.47623 6.53384 6.88144 7.47833 8.94667 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.015866 C = 0.011219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.330572 B = 1764.301959 C = 2495.231690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.044 3.956 3 Si 0.926 3.074 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.489 4.489 8 H 0.045 0.955 9 C 0.032 3.968 10 C 0.090 3.910 11 N -0.519 5.519 12 C 0.043 3.957 13 C -0.156 4.156 14 C 0.065 3.935 15 H 0.132 0.868 16 F -0.230 7.230 17 C 0.014 3.986 18 C -0.205 4.205 19 C -0.180 4.180 20 H 0.258 0.742 21 H 0.034 0.966 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -2.279 -8.779 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.155 4.155 3 Si 0.751 3.249 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.032 3.968 10 C -0.038 4.038 11 N -0.243 5.243 12 C -0.085 4.085 13 C -0.194 4.194 14 C 0.029 3.971 15 H 0.150 0.850 16 F -0.211 7.211 17 C -0.114 4.114 18 C -0.244 4.244 19 C -0.217 4.217 20 H 0.068 0.932 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.126 0.874 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.286 -2.440 -8.790 9.127 hybrid contribution -0.420 1.368 0.691 1.590 sum -0.134 -1.071 -8.099 8.171 Atomic orbital electron populations 1.69982 1.06704 1.26614 1.50500 1.25340 0.95163 1.00838 0.94162 0.86128 0.79069 0.80526 0.79136 1.18783 1.21093 1.20262 1.20623 0.92971 0.90677 1.48377 0.93654 1.18994 0.95769 0.89222 0.92849 1.21804 0.95983 0.98214 0.87798 1.63492 1.39023 1.19520 1.02289 1.23233 1.01478 0.89032 0.94750 1.23445 0.97921 1.00422 0.97603 1.23066 0.81251 0.91874 1.00954 0.85050 1.92773 1.52809 1.82344 1.93216 1.23617 0.96054 0.97552 0.94221 1.22915 0.99515 1.07186 0.94751 1.22728 0.95820 1.00517 1.02631 0.93213 0.94714 0.91972 0.92566 0.92068 0.87381 0.90345 0.87147 0.93185 0.91520 0.90831 0.89773 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.40 9.47 21.45 0.20 -49.20 16 2 C 0.04 2.33 2.94 84.65 0.25 2.57 16 3 Si 0.93 42.11 29.55 68.60 2.03 44.14 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.49 -26.26 7.34 25.60 0.19 -26.07 16 8 H 0.05 2.48 7.83 -2.91 -0.02 2.45 16 9 C 0.03 1.61 1.95 -52.92 -0.10 1.50 16 10 C 0.09 4.27 4.45 86.30 0.38 4.65 16 11 N -0.52 -21.84 5.11 -885.53 -4.53 -26.37 16 12 C 0.04 1.85 4.69 86.77 0.41 2.26 16 13 C -0.16 -5.02 6.88 31.98 0.22 -4.80 16 14 C 0.07 1.97 4.75 31.77 0.15 2.12 16 15 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 16 F -0.23 -8.55 17.19 44.97 0.77 -7.78 16 17 C 0.01 0.46 6.65 86.65 0.58 1.04 16 18 C -0.21 -9.45 9.93 30.59 0.30 -9.14 16 19 C -0.18 -7.85 9.95 30.59 0.30 -7.54 16 20 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 21 H 0.03 1.54 7.78 -2.39 -0.02 1.53 16 22 H 0.06 3.37 5.29 -2.38 -0.01 3.36 16 23 H 0.06 2.80 4.67 -2.39 -0.01 2.79 16 24 H 0.06 2.86 7.15 -2.38 -0.02 2.84 16 25 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 28 H 0.05 1.74 7.42 -2.39 -0.02 1.73 16 29 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 32 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -58.18 255.75 2.25 -55.93 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.09 Total: 16.68 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 2.68 Total: -33.41 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -4.32 Total: -75.57 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 0.77 Total: -7.78 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -58.18 2.25 -55.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602840710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.460 kcal (2) G-P(sol) polarization free energy of solvation -58.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds