Wall clock time and date at job start Sun Mar 29 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46879 * 2 1 4 4 O 1.42905 * 109.50507 * 65.07717 * 3 2 1 5 5 C 1.53126 * 109.50673 * 304.99863 * 3 2 1 6 6 C 1.53109 * 109.16214 * 182.36593 * 5 3 2 7 7 C 1.53044 * 109.28150 * 57.65538 * 6 5 3 8 8 N 1.46846 * 109.51968 * 300.81833 * 7 6 5 9 9 C 1.46901 * 110.99738 * 185.83487 * 8 7 6 10 10 C 1.50701 * 109.46921 * 66.04780 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.46854 * 111.19765 * 61.74063 * 8 7 6 19 19 H 1.08997 * 109.47261 * 300.00249 * 1 2 3 20 20 H 1.09007 * 109.47060 * 60.00153 * 1 2 3 21 21 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47017 * 240.00238 * 2 1 3 23 23 H 1.08998 * 109.46954 * 119.99613 * 2 1 3 24 24 H 0.96696 * 114.00150 * 299.91811 * 4 3 2 25 25 H 1.08999 * 109.51776 * 62.45488 * 5 3 2 26 26 H 1.08999 * 109.51973 * 302.27222 * 5 3 2 27 27 H 1.09001 * 109.50885 * 297.71081 * 6 5 3 28 28 H 1.09007 * 109.50180 * 177.59468 * 6 5 3 29 29 H 1.08999 * 109.46106 * 180.80329 * 7 6 5 30 30 H 1.09001 * 109.45129 * 60.82697 * 7 6 5 31 31 H 1.09002 * 109.47401 * 306.04808 * 9 8 7 32 32 H 1.09001 * 109.46874 * 186.04821 * 9 8 7 33 33 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.46009 * 58.26928 * 18 8 7 35 35 H 1.08998 * 109.46194 * 178.23807 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6638 2.0816 1.2216 5 6 1.4298 2.2005 -1.1824 6 6 1.9906 3.6249 -1.2094 7 6 3.5169 3.5655 -1.3045 8 7 4.0522 2.8314 -0.1508 9 6 5.5205 2.8730 -0.1355 10 6 5.9804 4.2893 0.0960 11 1 5.2546 5.0794 0.2198 12 6 7.3279 4.5763 0.1507 13 7 8.2118 3.6142 0.0004 14 14 7.8980 6.3318 0.4383 15 1 7.3752 6.8148 1.7416 16 1 9.3823 6.3739 0.4536 17 1 7.3898 7.2023 -0.6522 18 6 3.5647 1.4462 -0.1301 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.7087 2.1180 1.3686 25 1 0.3462 2.2376 -1.0710 26 1 1.6842 1.6911 -2.1118 27 1 1.7029 4.1468 -0.2967 28 1 1.5926 4.1564 -2.0739 29 1 3.9202 4.5781 -1.3095 30 1 3.8037 3.0556 -2.2242 31 1 5.9041 2.5182 -1.0921 32 1 5.8937 2.2343 0.6651 33 1 9.1598 3.8161 0.0386 34 1 3.8515 0.9465 -1.0554 35 1 4.0029 0.9197 0.7177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602981405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:06 Heat of formation + Delta-G solvation = -61.743147 kcal Electronic energy + Delta-G solvation = -15064.939303 eV Core-core repulsion = 12676.230332 eV Total energy + Delta-G solvation = -2388.708971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.33178 -35.86443 -33.06627 -32.53613 -31.49593 -28.95288 -26.75198 -24.45217 -22.91415 -21.85762 -20.12947 -19.26177 -16.29433 -16.15231 -15.55448 -14.64029 -14.33024 -14.16116 -14.01639 -13.57816 -13.05905 -12.42699 -12.16677 -12.05664 -11.95742 -11.52741 -11.30639 -11.06551 -10.96238 -10.75728 -10.59676 -10.47123 -10.28762 -9.98847 -9.53419 -9.33361 -9.06060 -8.37017 -7.06697 -5.96483 -3.97189 3.37978 3.41352 3.45119 4.46601 4.54142 4.79002 4.95165 5.09183 5.18635 5.32964 5.38510 5.42302 5.48492 5.76597 5.87213 5.91802 5.97893 6.01999 6.16735 6.22017 6.23815 6.26712 6.38216 6.55108 6.82625 6.83245 7.38236 7.42028 7.87610 8.06816 8.20505 8.32496 8.65549 9.10532 9.66511 11.14531 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055994 B = 0.007332 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.929223 B = 3818.016978 C = 3997.167989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.152 4.152 3 C 0.139 3.861 4 O -0.534 6.534 5 C -0.144 4.144 6 C -0.114 4.114 7 C 0.064 3.936 8 N -0.525 5.525 9 C 0.193 3.807 10 C -0.504 4.504 11 H 0.063 0.937 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.071 3.929 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.358 0.642 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.014 0.986 31 H -0.012 1.012 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.031 0.969 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 -5.208 -2.255 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.190 4.190 3 C 0.097 3.903 4 O -0.338 6.338 5 C -0.181 4.181 6 C -0.152 4.152 7 C -0.064 4.064 8 N -0.249 5.249 9 C 0.068 3.932 10 C -0.543 4.543 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.058 4.058 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.203 0.797 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.033 0.967 31 H 0.006 0.994 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.663 -4.945 -1.776 14.639 hybrid contribution 0.146 0.320 -0.718 0.800 sum -13.518 -4.624 -2.494 14.503 Atomic orbital electron populations 1.21836 0.95942 1.01679 1.01784 1.22207 0.96104 0.97880 1.02809 1.21254 0.95228 0.89464 0.84317 1.86787 1.26310 1.81102 1.39587 1.22295 0.99558 0.97631 0.98662 1.21562 0.96498 0.95585 1.01543 1.21947 0.93052 1.00323 0.91087 1.61926 1.12222 1.10181 1.40563 1.19715 0.80002 0.97878 0.95609 1.21140 0.91347 0.93520 1.48250 0.91894 1.24992 0.96722 0.97385 0.95597 1.69954 1.01375 1.31947 1.50801 0.86555 0.77236 0.84724 0.78849 1.20149 1.21407 1.20330 1.21947 0.91619 0.92395 0.99866 0.92694 0.92339 0.92747 0.91365 0.91127 0.79681 0.92085 0.91960 0.90885 0.92708 0.89907 0.96744 0.99384 0.95245 0.92951 0.95085 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.22 37.16 0.34 -1.13 16 2 C -0.15 -1.84 5.24 -26.73 -0.14 -1.98 16 3 C 0.14 2.12 0.75 -90.54 -0.07 2.05 16 4 O -0.53 -8.71 12.30 -35.23 -0.43 -9.15 16 5 C -0.14 -2.00 4.41 -26.61 -0.12 -2.12 16 6 C -0.11 -1.85 5.94 -26.65 -0.16 -2.01 16 7 C 0.06 1.32 5.30 -3.83 -0.02 1.30 16 8 N -0.52 -12.06 4.53 -236.10 -1.07 -13.13 16 9 C 0.19 5.27 4.72 -4.97 -0.02 5.25 16 10 C -0.50 -14.68 8.43 -34.44 -0.29 -14.97 16 11 H 0.06 1.82 7.14 -52.49 -0.37 1.44 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 14 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.07 1.37 4.43 -3.83 -0.02 1.35 16 19 H 0.05 0.48 6.89 -51.93 -0.36 0.12 16 20 H 0.06 0.53 6.40 -51.92 -0.33 0.20 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.36 4.26 7.54 45.56 0.34 4.60 16 25 H 0.06 0.71 6.50 -51.93 -0.34 0.37 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.26 7.80 -51.93 -0.40 0.85 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.84 6.72 -51.93 -0.35 1.49 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.76 16 32 H 0.03 0.86 7.98 -51.93 -0.41 0.45 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.45 8.01 -51.93 -0.42 1.04 16 LS Contribution 273.28 15.07 4.12 4.12 Total: -1.00 -31.69 273.28 -7.42 -39.11 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.16 Total: -0.62 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.59 Total: -10.79 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.33 Total: -39.84 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.43 Total: -9.15 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.69 -7.42 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602981405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.634 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds