Wall clock time and date at job start Sun Mar 29 2020 22:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46879 * 2 1 4 4 O 1.42905 * 109.50507 * 65.07717 * 3 2 1 5 5 C 1.53126 * 109.50673 * 304.99863 * 3 2 1 6 6 C 1.53109 * 109.16214 * 182.36593 * 5 3 2 7 7 C 1.53044 * 109.28150 * 57.65538 * 6 5 3 8 8 N 1.46846 * 109.51968 * 300.81833 * 7 6 5 9 9 C 1.46901 * 110.99738 * 185.83487 * 8 7 6 10 10 C 1.50701 * 109.46921 * 66.04780 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.46854 * 111.19765 * 61.74063 * 8 7 6 19 19 H 1.08997 * 109.47261 * 300.00249 * 1 2 3 20 20 H 1.09007 * 109.47060 * 60.00153 * 1 2 3 21 21 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47017 * 240.00238 * 2 1 3 23 23 H 1.08998 * 109.46954 * 119.99613 * 2 1 3 24 24 H 0.96696 * 114.00150 * 299.91811 * 4 3 2 25 25 H 1.08999 * 109.51776 * 62.45488 * 5 3 2 26 26 H 1.08999 * 109.51973 * 302.27222 * 5 3 2 27 27 H 1.09001 * 109.50885 * 297.71081 * 6 5 3 28 28 H 1.09007 * 109.50180 * 177.59468 * 6 5 3 29 29 H 1.08999 * 109.46106 * 180.80329 * 7 6 5 30 30 H 1.09001 * 109.45129 * 60.82697 * 7 6 5 31 31 H 1.09002 * 109.47401 * 306.04808 * 9 8 7 32 32 H 1.09001 * 109.46874 * 186.04821 * 9 8 7 33 33 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.46009 * 58.26928 * 18 8 7 35 35 H 1.08998 * 109.46194 * 178.23807 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6638 2.0816 1.2216 5 6 1.4298 2.2005 -1.1824 6 6 1.9906 3.6249 -1.2094 7 6 3.5169 3.5655 -1.3045 8 7 4.0522 2.8314 -0.1508 9 6 5.5205 2.8730 -0.1355 10 6 5.9804 4.2893 0.0960 11 1 5.2546 5.0794 0.2198 12 6 7.3279 4.5763 0.1507 13 7 8.2118 3.6142 0.0004 14 14 7.8980 6.3318 0.4383 15 1 7.3752 6.8148 1.7416 16 1 9.3823 6.3739 0.4536 17 1 7.3898 7.2023 -0.6522 18 6 3.5647 1.4462 -0.1301 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.7087 2.1180 1.3686 25 1 0.3462 2.2376 -1.0710 26 1 1.6842 1.6911 -2.1118 27 1 1.7029 4.1468 -0.2967 28 1 1.5926 4.1564 -2.0739 29 1 3.9202 4.5781 -1.3095 30 1 3.8037 3.0556 -2.2242 31 1 5.9041 2.5182 -1.0921 32 1 5.8937 2.2343 0.6651 33 1 9.1598 3.8161 0.0386 34 1 3.8515 0.9465 -1.0554 35 1 4.0029 0.9197 0.7177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602981405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:05 Heat of formation + Delta-G solvation = -85.529775 kcal Electronic energy + Delta-G solvation = -15065.970769 eV Core-core repulsion = 12676.230332 eV Total energy + Delta-G solvation = -2389.740437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68098 -37.45441 -34.94313 -33.84299 -33.03768 -30.38480 -28.65252 -25.98293 -24.37726 -23.49112 -21.60428 -20.63995 -18.50654 -17.35121 -17.12699 -16.30882 -15.89192 -15.54304 -15.35740 -15.11226 -14.57474 -14.11728 -13.59163 -13.48060 -13.19516 -13.10984 -12.78950 -12.65766 -12.46184 -12.39645 -12.19201 -11.82082 -11.76383 -11.63537 -11.43102 -10.83864 -10.64302 -10.48594 -8.94264 -8.21944 -6.32823 1.39078 1.43566 1.51511 2.39334 3.09332 3.21734 3.42741 3.85014 3.88950 4.01456 4.21342 4.30661 4.40592 4.63332 4.64912 4.69000 4.70463 4.81455 4.93247 4.98089 5.07586 5.12961 5.14991 5.20213 5.28785 5.32309 5.49108 5.52283 5.63355 6.04222 6.38160 6.65852 6.83383 7.10269 7.36871 8.89236 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055994 B = 0.007332 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.929223 B = 3818.016978 C = 3997.167989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.143 3.857 4 O -0.560 6.560 5 C -0.138 4.138 6 C -0.106 4.106 7 C 0.062 3.938 8 N -0.536 5.536 9 C 0.207 3.793 10 C -0.525 4.525 11 H 0.061 0.939 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.973 3.027 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.063 3.937 19 H 0.063 0.937 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.379 0.621 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.011 0.989 31 H -0.040 1.040 32 H -0.003 1.003 33 H 0.265 0.735 34 H 0.033 0.967 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 -4.584 -2.646 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.102 3.898 4 O -0.367 6.367 5 C -0.175 4.175 6 C -0.143 4.143 7 C -0.066 4.066 8 N -0.260 5.260 9 C 0.081 3.919 10 C -0.563 4.563 11 H 0.079 0.921 12 C -0.198 4.198 13 N -0.577 5.577 14 Si 0.797 3.203 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.066 4.066 19 H 0.082 0.918 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.227 0.773 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.030 0.970 31 H -0.023 1.023 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.922 -4.331 -2.172 16.643 hybrid contribution 0.849 0.072 -0.586 1.034 sum -15.073 -4.259 -2.757 15.904 Atomic orbital electron populations 1.21818 0.93236 1.02930 1.02740 1.22130 0.98332 0.95260 1.02671 1.21163 0.91923 0.91842 0.84840 1.86726 1.28487 1.81437 1.40031 1.22288 1.01516 0.95542 0.98175 1.21509 0.92731 0.97730 1.02373 1.22009 0.96341 0.98341 0.89939 1.61869 1.09242 1.12767 1.42103 1.19368 0.83217 0.96558 0.92757 1.21416 0.91925 0.94133 1.48798 0.92099 1.25974 0.96673 1.02320 0.94838 1.70089 1.01836 1.34454 1.51285 0.85379 0.76953 0.78776 0.79159 1.19405 1.20530 1.19004 1.22103 0.95211 0.90111 0.99134 0.91810 0.91239 0.91463 0.90921 0.92031 0.77259 0.88329 0.91106 0.91783 0.89867 0.92438 0.97044 1.02263 0.98488 0.92599 0.94849 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.22 71.98 0.66 -1.60 16 2 C -0.15 -3.21 5.24 30.59 0.16 -3.05 16 3 C 0.14 4.15 0.75 -10.74 -0.01 4.14 16 4 O -0.56 -17.37 12.30 -148.98 -1.83 -19.20 16 5 C -0.14 -3.39 4.41 30.67 0.14 -3.25 16 6 C -0.11 -3.21 5.94 30.65 0.18 -3.03 16 7 C 0.06 2.56 5.30 86.33 0.46 3.01 16 8 N -0.54 -25.45 4.53 -900.89 -4.08 -29.53 16 9 C 0.21 11.97 4.72 85.56 0.40 12.38 16 10 C -0.52 -31.59 8.43 25.60 0.22 -31.37 16 11 H 0.06 3.61 7.14 -2.91 -0.02 3.59 16 12 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 13 N -0.94 -58.57 13.29 21.45 0.28 -58.29 16 14 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 C 0.06 2.49 4.43 86.32 0.38 2.88 16 19 H 0.06 0.86 6.89 -2.39 -0.02 0.84 16 20 H 0.07 0.92 6.40 -2.38 -0.02 0.90 16 21 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.38 7.92 7.54 -74.06 -0.56 7.36 16 25 H 0.10 1.77 6.50 -2.39 -0.02 1.75 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 2.08 7.80 -2.39 -0.02 2.06 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.06 2.62 6.72 -2.39 -0.02 2.61 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 32 H 0.00 -0.19 7.98 -2.39 -0.02 -0.21 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.05 2.22 8.01 -2.39 -0.02 2.20 16 Total: -1.00 -70.78 273.28 -0.05 -70.83 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.50 Total: 7.71 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.05 Total: -19.45 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.80 Total: -87.82 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.83 Total: -19.20 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -70.78 -0.05 -70.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602981405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.695 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds