Wall clock time and date at job start Sun Mar 29 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47117 * 299.99700 * 3 2 1 6 6 H 1.48503 * 109.47349 * 59.99827 * 3 2 1 7 7 C 1.37878 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99583 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46906 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46716 * 185.60083 * 11 10 9 13 13 C 1.47244 * 110.99901 * 183.59271 * 12 11 10 14 14 C 1.53089 * 108.47871 * 54.49442 * 13 12 11 15 15 C 1.50304 * 109.71405 * 49.01569 * 14 13 12 16 16 C 1.30140 * 122.85358 * 343.48879 * 15 14 13 17 17 F 1.35105 * 118.38388 * 180.34554 * 16 15 14 18 18 C 1.46845 * 111.00163 * 306.53418 * 12 11 10 19 19 H 0.97002 * 119.99498 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.46973 * 60.00103 * 9 7 2 21 21 H 1.08994 * 109.47113 * 299.99839 * 9 7 2 22 22 H 1.08999 * 109.46881 * 60.00123 * 10 9 7 23 23 H 1.08997 * 109.46958 * 300.00465 * 10 9 7 24 24 H 1.08996 * 109.47526 * 65.59846 * 11 10 9 25 25 H 1.08997 * 109.46999 * 305.59388 * 11 10 9 26 26 H 1.08996 * 109.63780 * 174.19555 * 13 12 11 27 27 H 1.09001 * 109.63208 * 294.79865 * 13 12 11 28 28 H 1.09002 * 109.42700 * 169.08395 * 14 13 12 29 29 H 1.08994 * 109.43514 * 288.93499 * 14 13 12 30 30 H 1.08004 * 118.57465 * 163.49509 * 15 14 13 31 31 H 1.09005 * 109.33403 * 47.82383 * 18 12 11 32 32 H 1.09002 * 109.33630 * 167.49802 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4290 -6.1003 0.1351 13 6 1.7363 -7.3970 0.0526 14 6 0.9286 -7.4339 -1.2473 15 6 1.7984 -7.0086 -2.3969 16 6 2.9264 -6.3803 -2.2340 17 9 3.6332 -6.0342 -3.3322 18 6 3.4816 -6.0216 -0.8858 19 1 -0.4849 0.8401 -0.0004 20 1 0.6246 -2.5570 -0.8898 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8905 23 1 2.8719 -3.6043 -0.8894 24 1 0.9311 -5.0892 -0.9361 25 1 0.7802 -5.0028 0.8353 26 1 2.4687 -8.2042 0.0518 27 1 1.0651 -7.5084 0.9042 28 1 0.5678 -8.4476 -1.4213 29 1 0.0787 -6.7564 -1.1656 30 1 1.4732 -7.2340 -3.4018 31 1 3.8786 -5.0070 -0.9173 32 1 4.2832 -6.7153 -0.6320 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611370916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:32 Heat of formation + Delta-G solvation = -38.550915 kcal Electronic energy + Delta-G solvation = -14262.250947 eV Core-core repulsion = 11751.087361 eV Total energy + Delta-G solvation = -2511.163586 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.68744 -39.41896 -34.27713 -32.59320 -30.86359 -30.51349 -27.04260 -24.66257 -23.28241 -21.87840 -20.26454 -18.08242 -16.85239 -16.25820 -15.80866 -15.49019 -14.92816 -14.72527 -14.42435 -14.29144 -13.14997 -12.83336 -12.32025 -12.23654 -12.17704 -11.65379 -11.42596 -11.23422 -11.08516 -10.78358 -10.49470 -10.42788 -9.64693 -9.34722 -9.03681 -8.80483 -8.33224 -8.22907 -5.98406 -4.00328 1.92798 3.32623 3.39941 3.44508 4.03344 4.30964 4.48313 4.75264 4.92637 5.12232 5.29526 5.37639 5.41193 5.50250 5.65136 5.74594 5.84584 5.92844 5.99532 6.27393 6.36305 6.55498 6.68850 6.74368 7.04325 7.22107 7.26827 7.69135 7.83688 8.01715 8.44911 9.06851 9.63729 11.13109 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042125 B = 0.006728 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.532075 B = 4160.417138 C = 4422.708708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.111 4.111 11 C 0.043 3.957 12 N -0.518 5.518 13 C 0.045 3.955 14 C -0.114 4.114 15 C -0.210 4.210 16 C 0.032 3.968 17 F -0.154 7.154 18 C 0.064 3.936 19 H 0.259 0.741 20 H 0.013 0.987 21 H 0.017 0.983 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -14.916 -1.819 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.083 4.083 12 N -0.239 5.239 13 C -0.083 4.083 14 C -0.152 4.152 15 C -0.229 4.229 16 C 0.011 3.989 17 F -0.132 7.132 18 C -0.065 4.065 19 H 0.069 0.931 20 H 0.032 0.968 21 H 0.035 0.965 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.427 -14.742 -1.356 15.195 hybrid contribution 0.022 0.938 -1.239 1.554 sum 3.450 -13.803 -2.595 14.463 Atomic orbital electron populations 1.69977 1.06057 1.26437 1.51106 1.25027 0.94848 0.99267 0.95373 0.86546 0.80163 0.83819 0.77554 1.19716 1.21051 1.20996 1.21288 0.93086 0.91039 1.50244 0.92629 1.19058 0.93967 0.91285 0.97142 1.21756 0.99387 0.93057 1.00639 1.22478 0.94643 0.90593 1.00621 1.62924 1.13749 1.02863 1.44360 1.22355 0.97481 0.92114 0.96376 1.20955 0.98628 1.02086 0.93530 1.22267 0.96264 1.03196 1.01194 1.20468 0.93010 0.99804 0.85605 1.91477 1.78676 1.90466 1.52631 1.21559 0.95770 1.04673 0.84473 0.93099 0.96831 0.96468 0.92321 0.93470 0.94317 0.90540 0.90560 0.89716 0.90289 0.89817 0.86627 0.87336 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.30 4.54 -26.73 -0.12 -2.42 16 11 C 0.04 0.75 4.50 -3.83 -0.02 0.73 16 12 N -0.52 -7.56 5.13 -236.11 -1.21 -8.77 16 13 C 0.04 0.52 6.06 -3.59 -0.02 0.50 16 14 C -0.11 -1.29 5.52 -28.03 -0.15 -1.44 16 15 C -0.21 -2.78 9.22 -35.97 -0.33 -3.11 16 16 C 0.03 0.47 6.87 -36.05 -0.25 0.22 16 17 F -0.15 -2.44 17.20 2.25 0.04 -2.40 16 18 C 0.06 0.91 5.67 -5.27 -0.03 0.88 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.05 0.98 6.41 -51.93 -0.33 0.65 16 24 H 0.04 0.68 5.56 -51.93 -0.29 0.39 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.02 6.86 -51.93 -0.36 0.66 16 30 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.11 1.67 5.65 -51.93 -0.29 1.38 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 262.04 15.07 3.95 3.95 Total: -1.00 -30.43 262.04 -7.59 -38.03 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.61 Total: -3.35 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.47 Total: -17.88 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.47 Total: -35.26 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.43 -7.59 -38.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611370916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.521 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds