Wall clock time and date at job start Sun Mar 29 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47117 * 299.99700 * 3 2 1 6 6 H 1.48503 * 109.47349 * 59.99827 * 3 2 1 7 7 C 1.37878 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99583 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46906 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46716 * 185.60083 * 11 10 9 13 13 C 1.47244 * 110.99901 * 183.59271 * 12 11 10 14 14 C 1.53089 * 108.47871 * 54.49442 * 13 12 11 15 15 C 1.50304 * 109.71405 * 49.01569 * 14 13 12 16 16 C 1.30140 * 122.85358 * 343.48879 * 15 14 13 17 17 F 1.35105 * 118.38388 * 180.34554 * 16 15 14 18 18 C 1.46845 * 111.00163 * 306.53418 * 12 11 10 19 19 H 0.97002 * 119.99498 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.46973 * 60.00103 * 9 7 2 21 21 H 1.08994 * 109.47113 * 299.99839 * 9 7 2 22 22 H 1.08999 * 109.46881 * 60.00123 * 10 9 7 23 23 H 1.08997 * 109.46958 * 300.00465 * 10 9 7 24 24 H 1.08996 * 109.47526 * 65.59846 * 11 10 9 25 25 H 1.08997 * 109.46999 * 305.59388 * 11 10 9 26 26 H 1.08996 * 109.63780 * 174.19555 * 13 12 11 27 27 H 1.09001 * 109.63208 * 294.79865 * 13 12 11 28 28 H 1.09002 * 109.42700 * 169.08395 * 14 13 12 29 29 H 1.08994 * 109.43514 * 288.93499 * 14 13 12 30 30 H 1.08004 * 118.57465 * 163.49509 * 15 14 13 31 31 H 1.09005 * 109.33403 * 47.82383 * 18 12 11 32 32 H 1.09002 * 109.33630 * 167.49802 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4290 -6.1003 0.1351 13 6 1.7363 -7.3970 0.0526 14 6 0.9286 -7.4339 -1.2473 15 6 1.7984 -7.0086 -2.3969 16 6 2.9264 -6.3803 -2.2340 17 9 3.6332 -6.0342 -3.3322 18 6 3.4816 -6.0216 -0.8858 19 1 -0.4849 0.8401 -0.0004 20 1 0.6246 -2.5570 -0.8898 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8905 23 1 2.8719 -3.6043 -0.8894 24 1 0.9311 -5.0892 -0.9361 25 1 0.7802 -5.0028 0.8353 26 1 2.4687 -8.2042 0.0518 27 1 1.0651 -7.5084 0.9042 28 1 0.5678 -8.4476 -1.4213 29 1 0.0787 -6.7564 -1.1656 30 1 1.4732 -7.2340 -3.4018 31 1 3.8786 -5.0070 -0.9173 32 1 4.2832 -6.7153 -0.6320 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611370916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:32 Heat of formation + Delta-G solvation = -57.851704 kcal Electronic energy + Delta-G solvation = -14263.087892 eV Core-core repulsion = 11751.087361 eV Total energy + Delta-G solvation = -2512.000531 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.84638 -40.54578 -36.09334 -34.29435 -32.44617 -31.55285 -28.78034 -26.13463 -24.65300 -23.21008 -21.97086 -19.29350 -18.38337 -17.93969 -17.03601 -16.62507 -16.56777 -16.05035 -15.81763 -15.78192 -14.43113 -14.19656 -14.07413 -13.68915 -13.36612 -13.14076 -12.92814 -12.68116 -12.59883 -12.40958 -12.19463 -11.90249 -11.42021 -11.34549 -11.09486 -10.56136 -9.87274 -9.38152 -8.21099 -6.31851 0.85773 1.39405 1.39434 1.53092 2.40242 2.90222 3.12165 3.24247 3.72143 3.98804 4.07614 4.19962 4.25030 4.45869 4.47225 4.55001 4.69710 4.77991 4.89061 5.00128 5.04501 5.10885 5.21352 5.36934 5.50344 5.54334 5.72625 5.84535 6.00230 6.03404 6.25944 6.84963 7.37394 8.91021 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042125 B = 0.006728 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.532075 B = 4160.417138 C = 4422.708708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.521 5.521 13 C 0.043 3.957 14 C -0.112 4.112 15 C -0.201 4.201 16 C 0.005 3.995 17 F -0.167 7.167 18 C 0.066 3.934 19 H 0.264 0.736 20 H -0.013 1.013 21 H -0.004 1.004 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -15.771 -1.569 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.133 4.133 11 C -0.071 4.071 12 N -0.242 5.242 13 C -0.084 4.084 14 C -0.150 4.150 15 C -0.220 4.220 16 C -0.015 4.015 17 F -0.146 7.146 18 C -0.063 4.063 19 H 0.072 0.928 20 H 0.006 0.994 21 H 0.014 0.986 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.067 -15.617 -1.104 16.176 hybrid contribution -0.217 1.147 -1.333 1.772 sum 3.850 -14.470 -2.438 15.170 Atomic orbital electron populations 1.70099 1.07745 1.27702 1.51761 1.25976 0.95798 1.03339 0.94718 0.85411 0.79064 0.78795 0.77869 1.18691 1.20393 1.20107 1.21728 0.93505 0.92488 1.50420 0.92386 1.18947 0.94344 0.92960 0.94763 1.21502 0.98182 0.93233 1.00431 1.22177 0.94533 0.89974 1.00411 1.62886 1.13417 1.03355 1.44557 1.22524 0.98160 0.90730 0.96987 1.21017 0.97817 1.03589 0.92608 1.22589 0.95541 1.01540 1.02368 1.20656 0.93971 1.01428 0.85474 1.91443 1.79104 1.90817 1.53209 1.21551 0.96138 1.04250 0.84360 0.92750 0.99432 0.98561 0.92394 0.93704 0.94847 0.90461 0.88453 0.88357 0.87207 0.90605 0.86002 0.89256 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.48 4.97 29.85 0.15 1.62 16 10 C -0.10 -4.03 4.54 30.60 0.14 -3.89 16 11 C 0.06 1.92 4.50 86.30 0.39 2.31 16 12 N -0.52 -14.29 5.13 -900.91 -4.62 -18.91 16 13 C 0.04 0.87 6.06 86.27 0.52 1.39 16 14 C -0.11 -2.24 5.52 29.75 0.16 -2.07 16 15 C -0.20 -4.96 9.22 26.41 0.24 -4.72 16 16 C 0.01 0.15 6.87 26.36 0.18 0.33 16 17 F -0.17 -5.25 17.20 44.97 0.77 -4.48 16 18 C 0.07 1.78 5.67 85.39 0.48 2.26 16 19 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 20 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 21 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 22 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.04 1.89 6.41 -2.39 -0.02 1.88 16 24 H 0.03 1.17 5.56 -2.39 -0.01 1.15 16 25 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.10 1.60 8.08 -2.39 -0.02 1.58 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.69 6.86 -2.39 -0.02 1.68 16 30 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.09 2.74 5.65 -2.38 -0.01 2.72 16 32 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -65.32 262.04 2.52 -62.80 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.09 Total: 4.53 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 2.97 Total: -33.79 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -4.34 Total: -76.10 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.77 Total: -4.48 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.32 2.52 -62.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611370916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.944 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds