Wall clock time and date at job start Sun Mar 29 2020 22:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20762 * 119.99524 * 2 1 4 4 C 1.50699 * 120.00408 * 180.02562 * 2 1 3 5 5 N 1.46895 * 109.47549 * 179.97438 * 4 2 1 6 6 C 1.48563 * 111.00169 * 290.13079 * 5 4 2 7 7 C 1.54381 * 104.59420 * 200.96007 * 6 5 4 8 8 C 1.54258 * 105.06138 * 23.84500 * 7 6 5 9 9 O 1.42892 * 110.32684 * 241.00490 * 8 7 6 10 10 C 1.50708 * 110.32123 * 118.89592 * 8 7 6 11 11 H 1.07990 * 120.00060 * 243.30635 * 10 8 7 12 12 C 1.37881 * 119.99663 * 63.30820 * 10 8 7 13 13 N 1.31515 * 119.99887 * 352.51180 * 12 10 8 14 14 Si 1.86791 * 120.00090 * 172.51079 * 12 10 8 15 15 H 1.48498 * 109.47370 * 179.97438 * 14 12 10 16 16 H 1.48506 * 109.47017 * 59.99927 * 14 12 10 17 17 H 1.48507 * 109.47260 * 300.00135 * 14 12 10 18 18 C 1.48558 * 111.00220 * 174.70581 * 5 4 2 19 19 H 1.09006 * 109.47133 * 239.99710 * 1 2 3 20 20 H 1.09003 * 109.47332 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47450 * 119.99742 * 1 2 3 22 22 H 1.08999 * 109.46904 * 59.99913 * 4 2 1 23 23 H 1.08999 * 109.46971 * 299.99915 * 4 2 1 24 24 H 1.08991 * 110.41509 * 82.17137 * 6 5 4 25 25 H 1.09001 * 110.50782 * 319.78254 * 6 5 4 26 26 H 1.09005 * 110.31778 * 264.95221 * 7 6 5 27 27 H 1.08996 * 110.40967 * 142.78944 * 7 6 5 28 28 H 0.96709 * 114.00008 * 296.70435 * 9 8 7 29 29 H 0.96997 * 120.00023 * 354.52284 * 13 12 10 30 30 H 1.09002 * 110.40701 * 40.26395 * 18 5 4 31 31 H 1.08997 * 110.41019 * 277.82219 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 7 3.7048 -1.0366 -0.0011 6 6 4.1405 -0.4697 -1.3033 7 6 5.6584 -0.7459 -1.3594 8 6 5.8821 -1.9479 -0.4189 9 8 6.7568 -1.5849 0.6511 10 6 6.4507 -3.1140 -1.1860 11 1 5.8870 -4.0312 -1.2704 12 6 7.6907 -3.0096 -1.7799 13 7 8.3126 -1.8510 -1.8044 14 14 8.4872 -4.5136 -2.5496 15 1 9.8071 -4.1389 -3.1174 16 1 7.6143 -5.0372 -3.6310 17 1 8.6729 -5.5606 -1.5129 18 6 4.4806 -2.2971 0.1263 19 1 -0.3634 -0.5139 0.8900 20 1 -0.3634 1.0277 0.0005 21 1 -0.3634 -0.5138 -0.8900 22 1 1.9972 -1.8762 -0.8908 23 1 1.9973 -1.8770 0.8892 24 1 3.9477 0.6025 -1.3348 25 1 3.6323 -0.9709 -2.1272 26 1 6.2143 0.1217 -1.0038 27 1 5.9615 -0.9986 -2.3754 28 1 7.6477 -1.3404 0.3652 29 1 7.8669 -1.0543 -1.4766 30 1 4.0253 -3.0858 -0.4726 31 1 4.5439 -2.6005 1.1713 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639694731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:59 Heat of formation + Delta-G solvation = -80.682202 kcal Electronic energy + Delta-G solvation = -14752.278994 eV Core-core repulsion = 12226.915669 eV Total energy + Delta-G solvation = -2525.363325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.53905 -38.03395 -35.01916 -32.18064 -31.24874 -29.55749 -28.07333 -25.72580 -23.91367 -20.81137 -19.72695 -19.21544 -17.77558 -15.91467 -15.57316 -15.32853 -14.91903 -13.91199 -13.80433 -13.61742 -13.35552 -13.27828 -12.39858 -12.23899 -12.02682 -11.62307 -11.45363 -11.08279 -10.89342 -10.62249 -10.42354 -10.18270 -10.13592 -9.46560 -9.09355 -8.57732 -8.09305 -7.89664 -6.48304 -4.30221 2.12919 3.36236 3.39106 3.57756 4.00094 4.41616 4.66567 5.02267 5.09186 5.21921 5.38132 5.43991 5.51020 5.59566 5.76310 5.87377 5.93929 6.05889 6.31409 6.47266 6.75558 6.81616 7.10625 7.21862 7.32987 7.44874 7.76407 8.00045 8.22778 8.65325 9.16120 9.42292 10.82894 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059677 B = 0.007763 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.079683 B = 3605.854747 C = 3710.757746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.350 3.650 3 O -0.438 6.438 4 C -0.010 4.010 5 N -0.500 5.500 6 C 0.037 3.963 7 C -0.142 4.142 8 C 0.235 3.765 9 O -0.583 6.583 10 C -0.617 4.617 11 H 0.054 0.946 12 C 0.030 3.970 13 N -0.909 5.909 14 Si 1.068 2.932 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.286 1.286 18 C 0.057 3.943 19 H 0.090 0.910 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.065 0.935 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.368 0.632 29 H 0.273 0.727 30 H 0.048 0.952 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 -0.132 0.819 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.223 3.777 3 O -0.310 6.310 4 C -0.139 4.139 5 N -0.224 5.224 6 C -0.090 4.090 7 C -0.181 4.181 8 C 0.195 3.805 9 O -0.390 6.390 10 C -0.655 4.655 11 H 0.073 0.927 12 C -0.175 4.175 13 N -0.548 5.548 14 Si 0.896 3.104 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.212 1.212 18 C -0.070 4.070 19 H 0.108 0.892 20 H 0.098 0.902 21 H 0.107 0.893 22 H 0.083 0.917 23 H 0.121 0.879 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.216 0.784 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.032 0.150 0.894 11.069 hybrid contribution -1.311 -0.087 -0.328 1.354 sum -12.343 0.063 0.566 12.356 Atomic orbital electron populations 1.22301 0.94721 1.04637 1.04263 1.24617 0.91332 0.90477 0.71240 1.90401 1.71876 1.34738 1.33971 1.22730 0.91701 0.96552 1.02959 1.65354 1.01176 1.23830 1.32062 1.23116 0.97203 0.99821 0.88895 1.23181 0.93269 0.99525 1.02100 1.19459 0.86374 0.91043 0.83591 1.86280 1.25695 1.90079 1.36950 1.22473 1.06702 1.00230 1.36113 0.92727 1.25891 0.94426 1.02639 0.94542 1.70882 1.39896 0.99402 1.44647 0.83568 0.76354 0.74306 0.76215 1.20591 1.21423 1.21211 1.23016 0.93769 0.89348 1.00904 0.89175 0.90199 0.89303 0.91730 0.87901 0.90561 0.95019 0.92647 0.90869 0.78388 0.91362 0.93364 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 10.26 36.00 0.37 -1.45 16 2 C 0.35 4.97 7.07 -29.04 -0.21 4.77 16 3 O -0.44 -8.14 15.57 6.00 0.09 -8.05 16 4 C -0.01 -0.15 5.23 -4.98 -0.03 -0.18 16 5 N -0.50 -10.16 5.06 -231.42 -1.17 -11.33 16 6 C 0.04 0.78 5.80 -2.18 -0.01 0.77 16 7 C -0.14 -3.42 4.65 -25.35 -0.12 -3.54 16 8 C 0.24 6.03 1.03 -90.39 -0.09 5.94 16 9 O -0.58 -15.77 12.95 -35.23 -0.46 -16.23 16 10 C -0.62 -16.92 8.05 -34.44 -0.28 -17.20 16 11 H 0.05 1.48 7.58 -52.49 -0.40 1.08 16 12 C 0.03 0.81 5.06 -17.82 -0.09 0.72 16 13 N -0.91 -25.92 12.58 55.43 0.70 -25.22 16 14 Si 1.07 24.28 29.91 -169.99 -5.08 19.19 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 18 C 0.06 1.26 5.76 -2.18 -0.01 1.24 16 19 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 21 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 23 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 24 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 25 H 0.03 0.62 7.82 -51.93 -0.41 0.22 16 26 H 0.05 1.36 7.70 -51.93 -0.40 0.96 16 27 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 28 H 0.37 9.88 6.83 45.56 0.31 10.19 16 29 H 0.27 7.66 4.51 -40.82 -0.18 7.48 16 30 H 0.05 1.02 7.55 -51.93 -0.39 0.63 16 31 H 0.07 1.66 8.08 -51.93 -0.42 1.24 16 LS Contribution 254.81 15.07 3.84 3.84 Total: -1.00 -31.79 254.81 -6.06 -37.85 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.51 Total: 8.86 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.47 Total: -8.92 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.47 Total: -36.55 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.36 Total: -24.28 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.19 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.79 -6.06 -37.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639694731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.833 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds