Wall clock time and date at job start Sun Mar 29 2020 22:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20756 * 119.99803 * 2 1 4 4 C 1.50702 * 120.00054 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.46836 * 180.02562 * 4 2 1 6 6 C 1.48536 * 110.99773 * 287.39269 * 5 4 2 7 7 C 1.54941 * 103.22304 * 200.28225 * 6 5 4 8 8 C 1.54598 * 102.92255 * 37.41484 * 7 6 5 9 9 O 1.42898 * 110.30568 * 96.95797 * 8 7 6 10 10 C 1.50693 * 110.30851 * 219.12500 * 8 7 6 11 11 H 1.07998 * 120.00413 * 116.96556 * 10 8 7 12 12 C 1.37882 * 120.00024 * 296.96946 * 10 8 7 13 13 N 1.31510 * 120.00218 * 5.96816 * 12 10 8 14 14 Si 1.86801 * 119.99848 * 185.96800 * 12 10 8 15 15 H 1.48505 * 109.47288 * 84.90462 * 14 12 10 16 16 H 1.48506 * 109.46970 * 204.90490 * 14 12 10 17 17 H 1.48499 * 109.47494 * 324.90558 * 14 12 10 18 18 C 1.47907 * 110.99567 * 169.99803 * 5 4 2 19 19 H 1.08999 * 109.47421 * 240.00159 * 1 2 3 20 20 H 1.08996 * 109.47312 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46797 * 119.99859 * 1 2 3 22 22 H 1.08994 * 109.46856 * 59.99735 * 4 2 1 23 23 H 1.09004 * 109.46744 * 299.99792 * 4 2 1 24 24 H 1.08999 * 110.66850 * 318.71591 * 6 5 4 25 25 H 1.09000 * 110.66097 * 81.85053 * 6 5 4 26 26 H 1.08994 * 110.72279 * 279.05855 * 7 6 5 27 27 H 1.08998 * 110.72124 * 155.77154 * 7 6 5 28 28 H 0.96703 * 114.00453 * 58.62866 * 9 8 7 29 29 H 0.96995 * 120.00320 * 180.02562 * 13 12 10 30 30 H 1.08994 * 109.91840 * 26.49081 * 18 5 4 31 31 H 1.08998 * 109.91665 * 265.19712 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 7 3.7048 -1.0366 0.0002 6 6 4.1528 -0.5309 -1.3227 7 6 5.6771 -0.8085 -1.3105 8 6 5.7755 -2.1656 -0.5766 9 8 5.8618 -3.2349 -1.5206 10 6 6.9709 -2.1786 0.3409 11 1 6.8323 -2.2786 1.4072 12 6 8.2419 -2.0628 -0.1812 13 7 8.4067 -1.8236 -1.4638 14 14 9.7296 -2.2457 0.9336 15 1 10.0697 -3.6846 1.0731 16 1 10.8827 -1.5195 0.3433 17 1 9.4193 -1.6786 2.2704 18 6 4.4743 -2.2769 0.2395 19 1 -0.3634 -0.5138 0.8900 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3633 -0.5138 -0.8901 22 1 1.9972 -1.8762 -0.8908 23 1 1.9972 -1.8770 0.8892 24 1 3.6680 -1.0810 -2.1292 25 1 3.9571 0.5376 -1.4123 26 1 6.2062 -0.0321 -0.7581 27 1 6.0622 -0.8909 -2.3268 28 1 6.6168 -3.1692 -2.1214 29 1 9.3007 -1.7425 -1.8311 30 1 3.8995 -3.1407 -0.0942 31 1 4.7079 -2.3701 1.3000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639694732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:02 Heat of formation + Delta-G solvation = -80.395375 kcal Electronic energy + Delta-G solvation = -14697.209468 eV Core-core repulsion = 12171.858580 eV Total energy + Delta-G solvation = -2525.350887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40740 -37.80071 -34.63731 -32.08907 -31.14982 -29.47672 -28.03188 -25.88198 -23.87424 -20.64006 -19.47445 -19.21068 -17.04784 -15.70457 -15.62909 -15.19247 -14.79413 -14.29982 -13.81442 -13.67238 -13.26519 -12.48342 -12.21232 -12.14096 -11.98832 -11.63018 -11.18612 -11.17392 -10.86259 -10.53218 -10.43638 -10.27399 -9.93866 -9.37987 -9.04672 -8.57595 -8.07682 -7.77055 -6.14708 -4.20287 2.21514 3.28344 3.34467 3.38241 4.07780 4.37423 4.75731 5.08991 5.12012 5.28300 5.45681 5.51399 5.61348 5.76140 5.96670 6.06541 6.15130 6.28107 6.39665 6.57963 6.95853 7.10539 7.32443 7.54919 7.64147 7.70011 7.85814 7.88458 8.21712 8.80586 9.42502 9.49452 10.92768 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056418 B = 0.007758 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.172645 B = 3608.383056 C = 3671.304316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.350 3.650 3 O -0.437 6.437 4 C -0.007 4.007 5 N -0.503 5.503 6 C 0.030 3.970 7 C -0.114 4.114 8 C 0.242 3.758 9 O -0.593 6.593 10 C -0.528 4.528 11 H 0.062 0.938 12 C 0.069 3.931 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.054 3.946 19 H 0.089 0.911 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.379 0.621 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 0.423 0.600 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.223 3.777 3 O -0.309 6.309 4 C -0.136 4.136 5 N -0.228 5.228 6 C -0.098 4.098 7 C -0.152 4.152 8 C 0.202 3.798 9 O -0.402 6.402 10 C -0.566 4.566 11 H 0.080 0.920 12 C -0.133 4.133 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.073 4.073 19 H 0.108 0.892 20 H 0.097 0.903 21 H 0.106 0.894 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.558 1.206 1.197 11.682 hybrid contribution 1.074 -0.623 -0.374 1.297 sum -10.484 0.583 0.823 10.532 Atomic orbital electron populations 1.22305 0.94912 1.04547 1.04193 1.24627 0.91214 0.90578 0.71305 1.90399 1.71870 1.34712 1.33876 1.22728 0.91801 0.96329 1.02783 1.64719 1.00739 1.27090 1.30224 1.23407 0.98557 0.99487 0.88334 1.22963 0.90890 1.00434 1.00955 1.19362 0.91001 0.83315 0.86136 1.86106 1.52851 1.50661 1.50579 1.21645 0.90865 1.50324 0.93779 0.92005 1.25010 0.99187 0.93773 0.95360 1.69757 1.22983 1.48897 1.12073 0.86493 0.81774 0.78214 0.80817 1.20488 1.21235 1.19837 1.22889 0.94610 0.88982 1.00854 0.89239 0.90270 0.89386 0.91840 0.88102 0.95287 0.90907 0.91198 0.91647 0.77095 0.92478 0.94544 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 10.26 36.01 0.37 -1.50 16 2 C 0.35 5.04 7.09 -29.03 -0.21 4.84 16 3 O -0.44 -8.21 15.79 6.00 0.09 -8.11 16 4 C -0.01 -0.11 5.13 -4.97 -0.03 -0.13 16 5 N -0.50 -10.28 4.91 -231.88 -1.14 -11.42 16 6 C 0.03 0.63 5.93 -1.89 -0.01 0.61 16 7 C -0.11 -2.77 5.27 -24.87 -0.13 -2.91 16 8 C 0.24 6.16 0.98 -90.42 -0.09 6.07 16 9 O -0.59 -15.50 12.92 -35.23 -0.46 -15.96 16 10 C -0.53 -14.55 8.10 -34.44 -0.28 -14.82 16 11 H 0.06 1.70 7.35 -52.49 -0.39 1.31 16 12 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 13 N -0.90 -24.49 10.94 55.43 0.61 -23.89 16 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.05 1.19 6.13 -2.75 -0.02 1.18 16 19 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 20 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 21 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.89 7.83 -51.93 -0.41 0.49 16 23 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 24 H 0.03 0.58 7.81 -51.93 -0.41 0.18 16 25 H 0.07 1.53 7.11 -51.93 -0.37 1.17 16 26 H 0.07 1.84 7.86 -51.93 -0.41 1.44 16 27 H 0.06 1.63 7.91 -51.93 -0.41 1.22 16 28 H 0.38 9.98 7.43 45.56 0.34 10.32 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 0.77 7.59 -51.93 -0.39 0.37 16 31 H 0.08 1.78 7.39 -51.93 -0.38 1.40 16 LS Contribution 258.66 15.07 3.90 3.90 Total: -1.00 -30.37 258.66 -6.15 -36.51 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.65 Total: 7.71 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.48 Total: -4.90 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.53 Total: -35.30 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.36 Total: -24.07 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.37 -6.15 -36.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639694732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.885 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds