Wall clock time and date at job start Sun Mar 29 2020 22:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20756 * 119.99803 * 2 1 4 4 C 1.50702 * 120.00054 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.46836 * 180.02562 * 4 2 1 6 6 C 1.48536 * 110.99773 * 287.39269 * 5 4 2 7 7 C 1.54941 * 103.22304 * 200.28225 * 6 5 4 8 8 C 1.54598 * 102.92255 * 37.41484 * 7 6 5 9 9 O 1.42898 * 110.30568 * 96.95797 * 8 7 6 10 10 C 1.50693 * 110.30851 * 219.12500 * 8 7 6 11 11 H 1.07998 * 120.00413 * 116.96556 * 10 8 7 12 12 C 1.37882 * 120.00024 * 296.96946 * 10 8 7 13 13 N 1.31510 * 120.00218 * 5.96816 * 12 10 8 14 14 Si 1.86801 * 119.99848 * 185.96800 * 12 10 8 15 15 H 1.48505 * 109.47288 * 84.90462 * 14 12 10 16 16 H 1.48506 * 109.46970 * 204.90490 * 14 12 10 17 17 H 1.48499 * 109.47494 * 324.90558 * 14 12 10 18 18 C 1.47907 * 110.99567 * 169.99803 * 5 4 2 19 19 H 1.08999 * 109.47421 * 240.00159 * 1 2 3 20 20 H 1.08996 * 109.47312 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46797 * 119.99859 * 1 2 3 22 22 H 1.08994 * 109.46856 * 59.99735 * 4 2 1 23 23 H 1.09004 * 109.46744 * 299.99792 * 4 2 1 24 24 H 1.08999 * 110.66850 * 318.71591 * 6 5 4 25 25 H 1.09000 * 110.66097 * 81.85053 * 6 5 4 26 26 H 1.08994 * 110.72279 * 279.05855 * 7 6 5 27 27 H 1.08998 * 110.72124 * 155.77154 * 7 6 5 28 28 H 0.96703 * 114.00453 * 58.62866 * 9 8 7 29 29 H 0.96995 * 120.00320 * 180.02562 * 13 12 10 30 30 H 1.08994 * 109.91840 * 26.49081 * 18 5 4 31 31 H 1.08998 * 109.91665 * 265.19712 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 7 3.7048 -1.0366 0.0002 6 6 4.1528 -0.5309 -1.3227 7 6 5.6771 -0.8085 -1.3105 8 6 5.7755 -2.1656 -0.5766 9 8 5.8618 -3.2349 -1.5206 10 6 6.9709 -2.1786 0.3409 11 1 6.8323 -2.2786 1.4072 12 6 8.2419 -2.0628 -0.1812 13 7 8.4067 -1.8236 -1.4638 14 14 9.7296 -2.2457 0.9336 15 1 10.0697 -3.6846 1.0731 16 1 10.8827 -1.5195 0.3433 17 1 9.4193 -1.6786 2.2704 18 6 4.4743 -2.2769 0.2395 19 1 -0.3634 -0.5138 0.8900 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3633 -0.5138 -0.8901 22 1 1.9972 -1.8762 -0.8908 23 1 1.9972 -1.8770 0.8892 24 1 3.6680 -1.0810 -2.1292 25 1 3.9571 0.5376 -1.4123 26 1 6.2062 -0.0321 -0.7581 27 1 6.0622 -0.8909 -2.3268 28 1 6.6168 -3.1692 -2.1214 29 1 9.3007 -1.7425 -1.8311 30 1 3.8995 -3.1407 -0.0942 31 1 4.7079 -2.3701 1.3000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639694732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:02 Heat of formation + Delta-G solvation = -104.043211 kcal Electronic energy + Delta-G solvation = -14698.234915 eV Core-core repulsion = 12171.858580 eV Total energy + Delta-G solvation = -2526.376334 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78097 -39.44364 -36.46118 -34.18189 -32.49934 -30.79094 -29.88200 -27.49371 -25.64375 -22.34521 -21.29340 -20.46990 -19.09772 -17.20120 -17.03761 -16.82540 -16.34378 -15.94578 -15.55597 -15.17928 -14.66977 -14.09277 -13.98114 -13.40928 -13.20871 -13.12537 -12.90401 -12.85997 -12.64913 -12.33924 -12.30007 -12.06977 -11.93481 -11.12744 -10.67633 -10.44719 -10.11499 -9.33149 -8.21228 -6.34481 1.12863 1.40961 1.41860 1.51330 2.39436 2.83192 3.05847 3.40662 3.87560 4.11817 4.25827 4.28994 4.40329 4.43095 4.53809 4.62039 4.74550 4.76624 4.80781 5.07870 5.20199 5.25386 5.39156 5.59075 5.75405 5.92851 6.12297 6.17479 6.69265 6.75698 7.33505 7.38253 8.84570 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056418 B = 0.007758 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.172645 B = 3608.383056 C = 3671.304316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.353 3.647 3 O -0.492 6.492 4 C -0.017 4.017 5 N -0.520 5.520 6 C 0.044 3.956 7 C -0.107 4.107 8 C 0.226 3.774 9 O -0.596 6.596 10 C -0.556 4.556 11 H 0.054 0.946 12 C 0.026 3.974 13 N -0.913 5.913 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.273 1.273 18 C 0.063 3.937 19 H 0.117 0.883 20 H 0.078 0.922 21 H 0.114 0.886 22 H 0.084 0.916 23 H 0.128 0.872 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.375 0.625 29 H 0.268 0.732 30 H 0.049 0.951 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 -0.182 1.068 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.230 3.770 3 O -0.367 6.367 4 C -0.145 4.145 5 N -0.245 5.245 6 C -0.084 4.084 7 C -0.146 4.146 8 C 0.186 3.814 9 O -0.404 6.404 10 C -0.594 4.594 11 H 0.072 0.928 12 C -0.174 4.174 13 N -0.553 5.553 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.198 1.198 18 C -0.064 4.064 19 H 0.136 0.864 20 H 0.097 0.903 21 H 0.132 0.868 22 H 0.102 0.898 23 H 0.146 0.854 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.223 0.777 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.136 0.584 1.665 13.254 hybrid contribution 1.526 -0.454 -0.529 1.677 sum -11.611 0.130 1.136 11.667 Atomic orbital electron populations 1.22270 0.90242 1.05460 1.06690 1.25229 0.93556 0.89129 0.69077 1.90402 1.73359 1.36145 1.36787 1.23020 0.88500 0.97932 1.05051 1.64626 1.03887 1.26335 1.29618 1.23201 0.96025 0.99652 0.89476 1.22737 0.93190 0.99243 0.99386 1.19587 0.92252 0.83355 0.86188 1.86094 1.52533 1.51152 1.50613 1.21930 0.92340 1.51253 0.93858 0.92781 1.25719 1.01595 0.93341 0.96753 1.69841 1.23582 1.48746 1.13112 0.85549 0.78602 0.78312 0.78997 1.19845 1.20692 1.19810 1.22697 0.93533 0.90324 0.99858 0.86434 0.90265 0.86784 0.89783 0.85381 0.93941 0.91105 0.94217 0.93039 0.77657 0.92288 0.93324 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 10.26 71.24 0.73 -2.02 16 2 C 0.35 9.32 7.09 29.10 0.21 9.52 16 3 O -0.49 -18.07 15.79 -1.44 -0.02 -18.09 16 4 C -0.02 -0.46 5.13 85.56 0.44 -0.02 16 5 N -0.52 -20.64 4.91 -887.55 -4.35 -25.00 16 6 C 0.04 1.85 5.93 86.65 0.51 2.36 16 7 C -0.11 -5.32 5.27 31.80 0.17 -5.15 16 8 C 0.23 11.59 0.98 -10.66 -0.01 11.58 16 9 O -0.60 -31.25 12.92 -148.98 -1.92 -33.18 16 10 C -0.56 -31.03 8.10 25.60 0.21 -30.82 16 11 H 0.05 3.02 7.35 -2.91 -0.02 2.99 16 12 C 0.03 1.43 5.27 84.66 0.45 1.87 16 13 N -0.91 -50.42 10.94 21.45 0.23 -50.19 16 14 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 C 0.06 2.76 6.13 86.44 0.53 3.29 16 19 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 21 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 22 H 0.08 2.04 7.83 -2.39 -0.02 2.03 16 23 H 0.13 2.86 8.08 -2.38 -0.02 2.84 16 24 H 0.04 1.65 7.81 -2.39 -0.02 1.63 16 25 H 0.07 3.00 7.11 -2.39 -0.02 2.98 16 26 H 0.04 2.16 7.86 -2.39 -0.02 2.14 16 27 H 0.05 2.64 7.91 -2.39 -0.02 2.62 16 28 H 0.37 20.03 7.43 -74.06 -0.55 19.48 16 29 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.05 1.96 7.59 -2.39 -0.02 1.94 16 31 H 0.07 3.30 7.39 -2.39 -0.02 3.28 16 Total: -1.00 -66.09 258.66 -0.24 -66.32 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.57 Total: 23.90 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 3.23 Total: -9.39 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -4.12 Total: -75.18 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -1.95 Total: -51.27 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -66.09 -0.24 -66.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639694732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.720 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds