Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 113.99607 * 2 1 4 4 C 1.53784 * 113.61266 * 149.99948 * 3 2 1 5 5 C 1.53786 * 87.08081 * 89.20023 * 4 3 2 6 6 C 1.50695 * 113.61269 * 139.98220 * 5 4 3 7 7 O 1.21274 * 120.00413 * 1.79946 * 6 5 4 8 8 N 1.34784 * 119.99635 * 181.52904 * 6 5 4 9 9 C 1.46499 * 119.99971 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47276 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99866 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99925 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00389 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99821 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47072 * 120.00100 * 14 12 10 17 17 H 1.48501 * 109.47474 * 239.99801 * 14 12 10 18 18 C 1.53782 * 87.17120 * 25.39020 * 5 4 3 19 19 H 1.09000 * 109.47061 * 299.99929 * 1 2 3 20 20 H 1.08996 * 109.47245 * 60.00008 * 1 2 3 21 21 H 1.09007 * 109.46743 * 179.97438 * 1 2 3 22 22 H 1.09001 * 112.85349 * 18.80249 * 3 2 1 23 23 H 1.08991 * 113.61760 * 334.65018 * 4 3 2 24 24 H 1.08997 * 113.61484 * 203.74594 * 4 3 2 25 25 H 1.08994 * 113.61418 * 270.80062 * 5 4 3 26 26 H 0.96999 * 120.00044 * 0.02562 * 8 6 5 27 27 H 1.09004 * 109.47024 * 300.00310 * 9 8 6 28 28 H 1.09005 * 109.47136 * 59.99926 * 9 8 6 29 29 H 0.96998 * 120.00132 * 179.97438 * 13 12 10 30 30 H 1.09000 * 113.61491 * 89.16239 * 18 5 4 31 31 H 1.09003 * 113.61159 * 220.06267 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3755 1.3719 0.7046 5 6 4.0063 1.0353 -0.6570 6 6 5.2712 1.8030 -0.9426 7 8 5.7132 2.5726 -0.1161 8 7 5.9142 1.6303 -2.1145 9 6 7.1436 2.3770 -2.3924 10 6 7.6592 2.0052 -3.7588 11 1 7.1248 1.2844 -4.3598 12 6 8.8137 2.5844 -4.2411 13 7 9.4652 3.4610 -3.5086 14 14 9.4531 2.1230 -5.9345 15 1 8.5453 1.1223 -6.5507 16 1 9.5069 3.3352 -6.7905 17 1 10.8153 1.5451 -5.8088 18 6 2.7535 1.6496 -1.3036 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0278 -0.0005 22 1 1.3137 2.0789 0.3237 23 1 3.5176 0.5950 1.4556 24 1 3.6304 2.3668 1.0698 25 1 4.1107 -0.0345 -0.8373 26 1 5.5626 1.0121 -2.7741 27 1 6.9339 3.4463 -2.3621 28 1 7.8948 2.1327 -1.6413 29 1 10.2776 3.8682 -3.8478 30 1 2.8380 2.7205 -1.4884 31 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703302043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = -71.081227 kcal Electronic energy + Delta-G solvation = -13921.744582 eV Core-core repulsion = 11396.797586 eV Total energy + Delta-G solvation = -2524.946996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.99114 -38.02899 -35.48266 -34.09772 -32.26426 -27.92524 -26.85001 -25.63010 -25.25351 -22.47507 -20.28230 -19.15758 -17.55980 -16.27008 -15.77678 -15.47553 -15.28317 -14.97313 -14.42261 -14.18427 -13.42585 -13.07872 -12.42295 -12.24612 -12.02012 -11.86481 -11.58145 -11.31483 -10.96754 -10.89785 -10.62064 -10.32773 -10.28134 -9.61565 -9.35416 -8.86823 -8.71618 -7.83226 -6.14888 -4.21519 3.24667 3.31727 3.35059 3.39726 3.55820 4.16800 4.40754 4.56625 4.70526 4.90503 5.01721 5.19442 5.21278 5.22938 5.39075 5.47583 5.75822 5.82727 5.88921 6.05849 6.17777 6.34035 7.11878 7.34349 7.49643 7.54703 7.70331 7.99664 8.68837 8.81461 9.16505 9.45472 10.95465 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061670 B = 0.005547 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.917850 B = 5046.626150 C = 5383.223139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.060 3.940 4 C -0.115 4.115 5 C -0.130 4.130 6 C 0.506 3.494 7 O -0.559 6.559 8 N -0.711 5.711 9 C 0.248 3.752 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.141 4.141 19 H 0.041 0.959 20 H 0.041 0.959 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.391 0.609 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.093 0.907 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.036 -5.661 4.156 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.002 3.998 4 C -0.153 4.153 5 C -0.152 4.152 6 C 0.291 3.709 7 O -0.439 6.439 8 N -0.358 5.358 9 C 0.127 3.873 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.524 5.524 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.179 4.179 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.124 0.876 25 H 0.129 0.871 26 H 0.223 0.777 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.406 -5.146 4.724 16.915 hybrid contribution 0.144 -0.298 -1.325 1.365 sum -15.262 -5.444 3.400 16.557 Atomic orbital electron populations 1.22799 0.81177 1.02618 0.99964 1.87887 1.19495 1.26812 1.94589 1.23171 0.94710 0.84858 0.97062 1.23072 0.92403 1.03836 0.95999 1.22684 0.92904 1.00964 0.98618 1.20348 0.85080 0.83000 0.82521 1.90629 1.67848 1.38617 1.46791 1.46472 1.27799 1.44574 1.16980 1.19108 0.80312 0.91798 0.96108 1.21281 1.09740 1.25824 1.01161 0.91851 1.24957 0.96319 0.94736 0.98042 1.69987 1.17540 1.27678 1.37176 0.86363 0.78812 0.78348 0.83404 1.19630 1.20813 1.20792 1.23380 0.94869 1.01801 0.97809 0.94048 0.94000 0.89713 0.90623 0.90445 0.87612 0.87138 0.77685 0.95630 0.95573 0.92531 0.88822 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.35 16 2 O -0.37 -4.42 10.63 -35.23 -0.37 -4.80 16 3 C 0.06 0.71 4.38 -25.83 -0.11 0.60 16 4 C -0.12 -1.60 7.23 -25.91 -0.19 -1.79 16 5 C -0.13 -2.00 4.08 -90.96 -0.37 -2.37 16 6 C 0.51 10.43 7.35 -10.98 -0.08 10.35 16 7 O -0.56 -13.74 15.91 5.56 0.09 -13.65 16 8 N -0.71 -15.49 5.55 -61.47 -0.34 -15.83 16 9 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 10 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 11 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 14 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C -0.14 -1.82 7.47 -25.83 -0.19 -2.01 16 19 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 20 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 21 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 22 H 0.08 0.75 7.87 -51.93 -0.41 0.35 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.11 1.57 7.46 -51.93 -0.39 1.18 16 25 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 26 H 0.39 7.40 8.32 -40.82 -0.34 7.06 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 270.54 15.07 4.08 4.08 Total: -1.00 -32.43 270.54 -5.60 -38.03 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.47 Total: 2.60 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.29 Total: -0.78 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.40 Total: -41.51 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.29 Total: -18.45 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.43 -5.60 -38.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703302043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.055 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds