Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 113.99607 * 2 1 4 4 C 1.53784 * 113.61266 * 149.99948 * 3 2 1 5 5 C 1.53786 * 87.08081 * 89.20023 * 4 3 2 6 6 C 1.50695 * 113.61269 * 139.98220 * 5 4 3 7 7 O 1.21274 * 120.00413 * 1.79946 * 6 5 4 8 8 N 1.34784 * 119.99635 * 181.52904 * 6 5 4 9 9 C 1.46499 * 119.99971 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47276 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99866 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99925 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00389 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99821 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47072 * 120.00100 * 14 12 10 17 17 H 1.48501 * 109.47474 * 239.99801 * 14 12 10 18 18 C 1.53782 * 87.17120 * 25.39020 * 5 4 3 19 19 H 1.09000 * 109.47061 * 299.99929 * 1 2 3 20 20 H 1.08996 * 109.47245 * 60.00008 * 1 2 3 21 21 H 1.09007 * 109.46743 * 179.97438 * 1 2 3 22 22 H 1.09001 * 112.85349 * 18.80249 * 3 2 1 23 23 H 1.08991 * 113.61760 * 334.65018 * 4 3 2 24 24 H 1.08997 * 113.61484 * 203.74594 * 4 3 2 25 25 H 1.08994 * 113.61418 * 270.80062 * 5 4 3 26 26 H 0.96999 * 120.00044 * 0.02562 * 8 6 5 27 27 H 1.09004 * 109.47024 * 300.00310 * 9 8 6 28 28 H 1.09005 * 109.47136 * 59.99926 * 9 8 6 29 29 H 0.96998 * 120.00132 * 179.97438 * 13 12 10 30 30 H 1.09000 * 113.61491 * 89.16239 * 18 5 4 31 31 H 1.09003 * 113.61159 * 220.06267 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3755 1.3719 0.7046 5 6 4.0063 1.0353 -0.6570 6 6 5.2712 1.8030 -0.9426 7 8 5.7132 2.5726 -0.1161 8 7 5.9142 1.6303 -2.1145 9 6 7.1436 2.3770 -2.3924 10 6 7.6592 2.0052 -3.7588 11 1 7.1248 1.2844 -4.3598 12 6 8.8137 2.5844 -4.2411 13 7 9.4652 3.4610 -3.5086 14 14 9.4531 2.1230 -5.9345 15 1 8.5453 1.1223 -6.5507 16 1 9.5069 3.3352 -6.7905 17 1 10.8153 1.5451 -5.8088 18 6 2.7535 1.6496 -1.3036 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0278 -0.0005 22 1 1.3137 2.0789 0.3237 23 1 3.5176 0.5950 1.4556 24 1 3.6304 2.3668 1.0698 25 1 4.1107 -0.0345 -0.8373 26 1 5.5626 1.0121 -2.7741 27 1 6.9339 3.4463 -2.3621 28 1 7.8948 2.1327 -1.6413 29 1 10.2776 3.8682 -3.8478 30 1 2.8380 2.7205 -1.4884 31 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703302043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = -95.264010 kcal Electronic energy + Delta-G solvation = -13922.793226 eV Core-core repulsion = 11396.797586 eV Total energy + Delta-G solvation = -2525.995640 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31176 -39.40608 -36.58612 -36.06092 -34.33097 -29.79062 -27.81200 -26.73193 -26.54382 -24.40464 -21.80747 -20.50820 -19.14594 -17.90098 -17.10628 -16.99970 -16.57525 -16.31498 -15.82718 -15.68450 -14.91016 -14.53970 -14.05979 -13.87435 -13.44100 -13.15406 -12.95263 -12.81477 -12.74349 -12.28093 -12.22949 -11.67047 -11.45665 -11.39126 -10.82499 -10.65991 -10.40661 -9.83554 -8.30167 -6.47000 1.42824 1.44069 1.57753 1.73680 2.32568 2.60736 2.74813 3.04663 3.48662 3.63972 3.76422 3.98814 4.33854 4.38029 4.60138 4.63977 4.77191 4.83632 4.91655 5.00436 5.08365 5.11122 5.21156 5.24728 5.48645 5.69281 5.84121 6.31069 6.64281 6.91033 7.22435 7.48544 8.82428 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061670 B = 0.005547 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.917850 B = 5046.626150 C = 5383.223139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.388 6.388 3 C 0.078 3.922 4 C -0.120 4.120 5 C -0.127 4.127 6 C 0.503 3.497 7 O -0.604 6.604 8 N -0.706 5.706 9 C 0.264 3.736 10 C -0.556 4.556 11 H 0.083 0.917 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.253 1.253 16 H -0.278 1.278 17 H -0.278 1.278 18 C -0.135 4.135 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.128 0.872 26 H 0.407 0.593 27 H -0.012 1.012 28 H -0.014 1.014 29 H 0.269 0.731 30 H 0.087 0.913 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.835 -7.140 2.786 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.307 6.307 3 C 0.020 3.980 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.291 3.709 7 O -0.486 6.486 8 N -0.355 5.355 9 C 0.141 3.859 10 C -0.594 4.594 11 H 0.101 0.899 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.809 3.191 15 H -0.177 1.177 16 H -0.203 1.203 17 H -0.204 1.204 18 C -0.173 4.173 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.116 0.884 22 H 0.118 0.882 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.146 0.854 26 H 0.243 0.757 27 H 0.006 0.994 28 H 0.004 0.996 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.256 -6.661 3.352 18.799 hybrid contribution 0.666 0.166 -0.813 1.064 sum -16.591 -6.495 2.539 17.997 Atomic orbital electron populations 1.23037 0.79201 1.03968 1.01069 1.87859 1.21654 1.26582 1.94564 1.22963 0.94103 0.85751 0.95226 1.23083 0.94044 1.03209 0.95444 1.22796 0.90454 1.01053 1.00549 1.21378 0.86078 0.82355 0.81127 1.90603 1.69331 1.40681 1.48013 1.46251 1.26467 1.44558 1.18215 1.18568 0.81551 0.90293 0.95510 1.21650 1.10252 1.26267 1.01214 0.89891 1.26081 0.96448 0.94279 1.02788 1.70144 1.18196 1.29001 1.39684 0.85089 0.78201 0.78403 0.77380 1.17679 1.20322 1.20404 1.23390 0.93217 1.01496 0.99156 0.92853 0.92976 0.88363 0.88243 0.89928 0.89053 0.85412 0.75714 0.99428 0.99609 0.92211 0.89403 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.53 16 2 O -0.39 -8.07 10.63 -148.98 -1.58 -9.65 16 3 C 0.08 1.63 4.38 31.18 0.14 1.76 16 4 C -0.12 -3.19 7.23 31.12 0.22 -2.96 16 5 C -0.13 -3.75 4.08 -11.01 -0.04 -3.80 16 6 C 0.50 21.07 7.35 87.65 0.64 21.71 16 7 O -0.60 -30.90 15.91 -3.01 -0.05 -30.95 16 8 N -0.71 -31.20 5.55 -466.78 -2.59 -33.79 16 9 C 0.26 14.90 5.43 85.63 0.46 15.37 16 10 C -0.56 -30.87 9.28 25.60 0.24 -30.63 16 11 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 12 C 0.00 0.20 5.46 84.65 0.46 0.66 16 13 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 14 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 15 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 C -0.13 -3.18 7.47 31.18 0.23 -2.95 16 19 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 20 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 21 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.09 2.71 7.46 -2.39 -0.02 2.69 16 25 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.41 15.10 8.32 -92.71 -0.77 14.33 16 27 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 28 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 29 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -71.93 270.54 2.02 -69.91 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.35 Total: 15.62 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 3.59 Total: 0.70 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -2.31 Total: -90.40 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.63 Total: -40.60 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.93 2.02 -69.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703302043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.355 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds