Wall clock time and date at job start Sun Mar 29 2020 21:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46838 * 2 1 4 4 O 1.45196 * 109.46984 * 179.97438 * 3 2 1 5 5 C 1.34661 * 117.00270 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99702 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00525 * 180.02562 * 5 4 3 8 8 C 1.37198 * 120.00364 * 185.53425 * 7 5 4 9 9 H 1.08001 * 120.00343 * 222.62645 * 8 7 5 10 10 C 1.38885 * 119.99745 * 42.62848 * 8 7 5 11 11 N 1.31462 * 120.00020 * 20.79239 * 10 8 7 12 12 Si 1.86798 * 120.00282 * 200.79030 * 10 8 7 13 13 H 1.48499 * 109.47580 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.46940 * 300.00426 * 12 10 8 15 15 H 1.48498 * 109.46867 * 59.99675 * 12 10 8 16 16 C 1.46502 * 120.00144 * 5.53732 * 7 5 4 17 17 C 1.52994 * 117.50284 * 182.88564 * 16 7 5 18 18 C 1.52992 * 117.50325 * 114.22195 * 16 7 5 19 19 H 1.08991 * 109.47168 * 300.00243 * 1 2 3 20 20 H 1.08997 * 109.46560 * 60.00696 * 1 2 3 21 21 H 1.09000 * 109.46525 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47619 * 240.00039 * 2 1 3 23 23 H 1.09000 * 109.47252 * 119.99523 * 2 1 3 24 24 H 1.08992 * 109.46983 * 59.99650 * 3 2 1 25 25 H 1.09000 * 109.46810 * 299.99794 * 3 2 1 26 26 H 0.97000 * 120.00205 * 5.14383 * 11 10 8 27 27 H 1.09008 * 115.54655 * 328.55714 * 16 7 5 28 28 H 1.09003 * 117.49994 * 0.02562 * 17 16 7 29 29 H 1.08998 * 117.50011 * 145.01674 * 17 16 7 30 30 H 1.09000 * 117.50384 * 214.97993 * 18 16 7 31 31 H 1.08997 * 117.49850 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4920 1.4426 0.0006 5 6 4.1033 2.6425 0.0002 6 8 3.4415 3.6616 -0.0003 7 7 5.4492 2.7131 0.0002 8 6 6.0723 3.9301 0.1143 9 1 6.9275 4.1590 -0.5043 10 6 5.6034 4.8676 1.0254 11 7 4.8611 4.4838 2.0402 12 14 6.0274 6.6739 0.8088 13 1 5.4109 7.4621 1.9060 14 1 7.5021 6.8440 0.8458 15 1 5.5067 7.1513 -0.4974 16 6 6.2469 1.4904 -0.1218 17 6 7.7687 1.6293 -0.0474 18 6 7.0923 1.3215 -1.3856 19 1 -0.3633 0.5138 0.8899 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 4.7027 3.5395 2.1956 27 1 5.8017 0.5937 0.3095 28 1 8.1765 2.6304 0.0926 29 1 8.3248 0.8239 0.4324 30 1 7.2038 0.3137 -1.7857 31 1 7.0547 2.1199 -2.1267 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706783302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:10 Heat of formation + Delta-G solvation = -55.845682 kcal Electronic energy + Delta-G solvation = -14711.695054 eV Core-core repulsion = 12187.408721 eV Total energy + Delta-G solvation = -2524.286333 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30081 -37.12089 -35.44903 -33.44177 -32.89659 -30.68921 -26.42707 -24.55313 -21.83630 -21.51471 -21.13965 -20.07585 -17.79723 -16.67491 -15.86126 -15.56899 -14.44423 -14.28032 -14.04866 -13.64328 -13.35831 -12.64874 -12.32132 -11.98514 -11.60903 -11.52185 -10.97875 -10.75567 -10.72916 -10.71270 -10.21495 -10.09137 -9.84282 -9.72010 -9.58058 -9.01875 -8.42833 -7.43338 -6.43939 -3.93990 3.34702 3.50995 3.52183 3.66390 4.14956 4.47827 4.73307 4.96518 5.12628 5.21365 5.36784 5.50183 5.62366 5.72261 5.75787 5.81106 5.87565 5.95750 6.07132 6.21081 6.29437 6.32055 6.41610 6.72430 6.89818 7.36098 7.87977 8.34340 8.75270 9.12734 9.50538 10.12581 10.86763 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027316 B = 0.011070 C = 0.008384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.784475 B = 2528.820058 C = 3339.063859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.089 3.911 4 O -0.389 6.389 5 C 0.600 3.400 6 O -0.567 6.567 7 N -0.417 5.417 8 C -0.419 4.419 9 H 0.078 0.922 10 C 0.035 3.965 11 N -0.846 5.846 12 Si 1.080 2.920 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.285 1.285 16 C 0.081 3.919 17 C -0.173 4.173 18 C -0.203 4.203 19 H 0.057 0.943 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.269 0.731 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 -8.061 -3.408 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.014 3.986 4 O -0.305 6.305 5 C 0.355 3.645 6 O -0.456 6.456 7 N -0.145 5.145 8 C -0.544 4.544 9 H 0.096 0.904 10 C -0.178 4.178 11 N -0.477 5.477 12 Si 0.907 3.093 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.211 1.211 16 C -0.025 4.025 17 C -0.211 4.211 18 C -0.243 4.243 19 H 0.076 0.924 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.075 -6.269 -2.756 7.155 hybrid contribution 0.174 -1.586 -0.671 1.731 sum -1.901 -7.855 -3.426 8.778 Atomic orbital electron populations 1.21670 0.94733 1.01828 1.02255 1.21490 0.95603 0.95820 1.03071 1.22659 0.77470 0.96651 1.01864 1.86154 1.21860 1.33794 1.88707 1.18505 0.84079 0.81033 0.80894 1.90879 1.63573 1.34458 1.56662 1.41686 0.99222 1.05191 1.68410 1.19694 1.17773 0.91910 1.25037 0.90450 1.26309 0.94600 1.05929 0.90920 1.70597 1.33242 1.19313 1.24578 0.83367 0.75528 0.73910 0.76520 1.20594 1.21337 1.21087 1.21658 0.90133 0.90463 1.00244 1.23118 0.95019 1.03285 0.99638 1.23284 1.07077 1.01511 0.92382 0.92402 0.92479 0.92180 0.91287 0.91243 0.92141 0.92336 0.92004 0.87494 0.87335 0.89621 0.89633 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.73 6.31 -26.72 -0.17 -1.89 16 3 C 0.09 1.71 5.47 37.16 0.20 1.92 16 4 O -0.39 -9.07 9.23 -40.38 -0.37 -9.44 16 5 C 0.60 16.58 6.89 54.05 0.37 16.95 16 6 O -0.57 -17.55 14.16 -19.28 -0.27 -17.83 16 7 N -0.42 -11.16 2.62 -113.10 -0.30 -11.46 16 8 C -0.42 -11.87 7.94 -14.91 -0.12 -11.99 16 9 H 0.08 2.11 7.18 -52.49 -0.38 1.73 16 10 C 0.03 1.01 4.31 -17.47 -0.08 0.94 16 11 N -0.85 -26.37 12.43 55.49 0.69 -25.69 16 12 Si 1.08 25.82 29.97 -169.99 -5.09 20.73 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.08 1.76 6.15 -67.94 -0.42 1.34 16 17 C -0.17 -3.27 9.80 -26.70 -0.26 -3.53 16 18 C -0.20 -3.75 10.37 -26.70 -0.28 -4.03 16 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.27 8.57 7.18 -40.82 -0.29 8.28 16 27 H 0.11 2.19 7.70 -51.92 -0.40 1.79 16 28 H 0.11 2.24 6.67 -51.93 -0.35 1.89 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 267.02 15.07 4.02 4.02 Total: -1.00 -33.66 267.02 -6.14 -39.80 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.44 Total: 1.47 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.37 Total: -1.60 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.39 Total: -37.15 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.65 Total: -27.27 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.09 Total: 20.73 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.66 -6.14 -39.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706783302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.050 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds