Wall clock time and date at job start Sun Mar 29 2020 21:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46838 * 2 1 4 4 O 1.45196 * 109.46984 * 179.97438 * 3 2 1 5 5 C 1.34661 * 117.00270 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99702 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00525 * 180.02562 * 5 4 3 8 8 C 1.37198 * 120.00364 * 185.53425 * 7 5 4 9 9 H 1.08001 * 120.00343 * 222.62645 * 8 7 5 10 10 C 1.38885 * 119.99745 * 42.62848 * 8 7 5 11 11 N 1.31462 * 120.00020 * 20.79239 * 10 8 7 12 12 Si 1.86798 * 120.00282 * 200.79030 * 10 8 7 13 13 H 1.48499 * 109.47580 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.46940 * 300.00426 * 12 10 8 15 15 H 1.48498 * 109.46867 * 59.99675 * 12 10 8 16 16 C 1.46502 * 120.00144 * 5.53732 * 7 5 4 17 17 C 1.52994 * 117.50284 * 182.88564 * 16 7 5 18 18 C 1.52992 * 117.50325 * 114.22195 * 16 7 5 19 19 H 1.08991 * 109.47168 * 300.00243 * 1 2 3 20 20 H 1.08997 * 109.46560 * 60.00696 * 1 2 3 21 21 H 1.09000 * 109.46525 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47619 * 240.00039 * 2 1 3 23 23 H 1.09000 * 109.47252 * 119.99523 * 2 1 3 24 24 H 1.08992 * 109.46983 * 59.99650 * 3 2 1 25 25 H 1.09000 * 109.46810 * 299.99794 * 3 2 1 26 26 H 0.97000 * 120.00205 * 5.14383 * 11 10 8 27 27 H 1.09008 * 115.54655 * 328.55714 * 16 7 5 28 28 H 1.09003 * 117.49994 * 0.02562 * 17 16 7 29 29 H 1.08998 * 117.50011 * 145.01674 * 17 16 7 30 30 H 1.09000 * 117.50384 * 214.97993 * 18 16 7 31 31 H 1.08997 * 117.49850 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4920 1.4426 0.0006 5 6 4.1033 2.6425 0.0002 6 8 3.4415 3.6616 -0.0003 7 7 5.4492 2.7131 0.0002 8 6 6.0723 3.9301 0.1143 9 1 6.9275 4.1590 -0.5043 10 6 5.6034 4.8676 1.0254 11 7 4.8611 4.4838 2.0402 12 14 6.0274 6.6739 0.8088 13 1 5.4109 7.4621 1.9060 14 1 7.5021 6.8440 0.8458 15 1 5.5067 7.1513 -0.4974 16 6 6.2469 1.4904 -0.1218 17 6 7.7687 1.6293 -0.0474 18 6 7.0923 1.3215 -1.3856 19 1 -0.3633 0.5138 0.8899 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 4.7027 3.5395 2.1956 27 1 5.8017 0.5937 0.3095 28 1 8.1765 2.6304 0.0926 29 1 8.3248 0.8239 0.4324 30 1 7.2038 0.3137 -1.7857 31 1 7.0547 2.1199 -2.1267 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706783302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:09 Heat of formation + Delta-G solvation = -77.424064 kcal Electronic energy + Delta-G solvation = -14712.630763 eV Core-core repulsion = 12187.408721 eV Total energy + Delta-G solvation = -2525.222042 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28804 -38.87554 -37.31583 -35.05872 -34.69669 -32.72843 -27.96446 -26.50717 -23.51841 -23.08035 -22.51546 -22.02686 -19.81185 -18.61400 -17.67531 -17.38743 -16.30702 -15.97304 -15.56028 -15.48856 -14.94708 -14.35949 -13.82789 -13.42527 -13.22356 -13.04415 -12.70945 -12.34067 -12.08069 -12.06573 -11.96040 -11.93290 -11.80884 -11.52427 -11.37490 -11.04026 -10.51151 -9.50128 -8.68833 -6.18146 1.45006 1.59657 1.68525 1.79072 2.12351 2.55173 3.02000 3.27348 3.33731 3.88958 3.93373 4.04394 4.17706 4.26122 4.29853 4.45541 4.49804 4.78594 4.78915 4.90378 5.03170 5.13279 5.14000 5.26856 5.37200 5.53451 5.69951 6.04392 6.65324 6.98888 7.36232 8.02724 8.59794 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027316 B = 0.011070 C = 0.008384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.784475 B = 2528.820058 C = 3339.063859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C 0.081 3.919 4 O -0.383 6.383 5 C 0.590 3.410 6 O -0.614 6.614 7 N -0.429 5.429 8 C -0.424 4.424 9 H 0.085 0.915 10 C -0.016 4.016 11 N -0.878 5.878 12 Si 1.124 2.876 13 H -0.286 1.286 14 H -0.249 1.249 15 H -0.283 1.283 16 C 0.039 3.961 17 C -0.159 4.159 18 C -0.176 4.176 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.250 0.750 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -9.409 -4.305 10.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C 0.006 3.994 4 O -0.299 6.299 5 C 0.346 3.654 6 O -0.507 6.507 7 N -0.157 5.157 8 C -0.550 4.550 9 H 0.103 0.897 10 C -0.221 4.221 11 N -0.510 5.510 12 Si 0.944 3.056 13 H -0.212 1.212 14 H -0.173 1.173 15 H -0.209 1.209 16 C -0.065 4.065 17 C -0.196 4.196 18 C -0.215 4.215 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.107 0.893 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.119 -7.676 -3.667 8.581 hybrid contribution -0.123 -1.274 -0.455 1.358 sum -1.242 -8.950 -4.122 9.932 Atomic orbital electron populations 1.21682 0.92278 1.03712 1.02376 1.21514 0.97440 0.91930 1.03899 1.23079 0.75262 1.00247 1.00771 1.86151 1.24054 1.31435 1.88218 1.18752 0.84587 0.81513 0.80555 1.90818 1.64814 1.36203 1.58823 1.41932 0.99508 1.06580 1.67717 1.19973 1.17645 0.92919 1.24442 0.89733 1.27814 0.93910 1.09985 0.90393 1.70735 1.35891 1.17874 1.26526 0.82864 0.77597 0.69099 0.76090 1.21151 1.17271 1.20938 1.21980 0.91432 0.88960 1.04145 1.23191 0.92776 1.03581 1.00081 1.23320 1.03812 1.03215 0.91127 0.92642 0.92121 0.89337 0.90055 0.90754 0.93982 0.92837 0.94048 0.86453 0.89363 0.85905 0.85623 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.11 -2.95 6.31 30.60 0.19 -2.76 16 3 C 0.08 3.17 5.47 71.99 0.39 3.56 16 4 O -0.38 -18.13 9.23 -55.70 -0.51 -18.64 16 5 C 0.59 33.50 6.89 129.79 0.89 34.39 16 6 O -0.61 -39.48 14.16 19.80 0.28 -39.20 16 7 N -0.43 -23.23 2.62 -742.13 -1.95 -25.18 16 8 C -0.42 -24.23 7.94 84.01 0.67 -23.56 16 9 H 0.09 4.59 7.18 -2.91 -0.02 4.57 16 10 C -0.02 -0.93 4.31 84.90 0.37 -0.57 16 11 N -0.88 -56.33 12.43 21.65 0.27 -56.06 16 12 Si 1.12 52.10 29.97 68.60 2.06 54.16 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 14 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 C 0.04 1.66 6.15 44.99 0.28 1.93 16 17 C -0.16 -5.61 9.80 30.62 0.30 -5.31 16 18 C -0.18 -5.99 10.37 30.61 0.32 -5.67 16 19 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 20 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 22 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.25 16.59 7.18 -92.71 -0.67 15.93 16 27 H 0.12 4.65 7.70 -2.38 -0.02 4.63 16 28 H 0.09 3.51 6.67 -2.39 -0.02 3.49 16 29 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -75.27 267.02 5.47 -69.80 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.21 Total: 15.34 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 4.12 Total: -0.21 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.68 Total: -81.24 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -0.23 Total: -57.84 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.06 Total: 54.16 kcal Total: -75.27 5.47 -69.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706783302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.627 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds