Wall clock time and date at job start Sun Mar 29 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46681 * 2 1 4 4 O 1.42902 * 109.47051 * 240.00234 * 2 1 3 5 5 C 1.52997 * 109.47281 * 120.00156 * 2 1 3 6 6 H 1.08999 * 109.49655 * 65.00372 * 5 2 1 7 7 C 1.53046 * 109.49656 * 185.06530 * 5 2 1 8 8 C 1.53040 * 109.53476 * 181.31479 * 7 5 2 9 9 C 1.53187 * 109.31470 * 298.63518 * 8 7 5 10 10 N 1.46917 * 108.77715 * 54.63872 * 9 8 7 11 11 C 1.36936 * 120.63360 * 126.43726 * 10 9 8 12 12 H 1.08001 * 119.99916 * 332.49484 * 11 10 9 13 13 C 1.38816 * 120.00207 * 152.50293 * 11 10 9 14 14 N 1.31617 * 119.99886 * 159.64101 * 13 11 10 15 15 Si 1.86797 * 120.00025 * 339.63908 * 13 11 10 16 16 H 1.48506 * 109.46992 * 95.15079 * 15 13 11 17 17 H 1.48496 * 109.47160 * 215.15493 * 15 13 11 18 18 H 1.48501 * 109.47269 * 335.15378 * 15 13 11 19 19 C 1.46938 * 118.76436 * 306.41176 * 10 9 8 20 20 H 1.08993 * 109.47255 * 60.00105 * 1 2 3 21 21 H 1.09002 * 109.46966 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46793 * 299.99471 * 1 2 3 23 23 H 1.08998 * 109.47375 * 60.00375 * 3 2 1 24 24 H 1.09004 * 109.46598 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47209 * 299.99745 * 3 2 1 26 26 H 0.96697 * 113.99883 * 179.97438 * 4 2 1 27 27 H 1.08999 * 109.45796 * 301.33880 * 7 5 2 28 28 H 1.09001 * 109.45701 * 61.30828 * 7 5 2 29 29 H 1.08997 * 109.49720 * 58.59194 * 8 7 5 30 30 H 1.09002 * 109.49500 * 178.65020 * 8 7 5 31 31 H 1.09003 * 109.58825 * 174.42864 * 9 8 7 32 32 H 1.09004 * 109.58442 * 294.84803 * 9 8 7 33 33 H 0.96996 * 119.99934 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.56209 * 293.78817 * 19 10 9 35 35 H 1.08997 * 109.62008 * 173.36082 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.7520 -1.7716 1.2059 7 6 3.5652 -0.6122 1.3151 8 6 4.0791 -1.3613 2.5467 9 6 3.4937 -0.7217 3.8095 10 7 2.0297 -0.6914 3.6892 11 6 1.2378 -1.2271 4.6695 12 1 1.6108 -2.0323 5.2851 13 6 -0.0445 -0.7353 4.8719 14 7 -0.9383 -1.4677 5.5020 15 14 -0.5013 0.9659 4.2501 16 1 -1.1424 0.8494 2.9156 17 1 -1.4483 1.6025 5.2005 18 1 0.7236 1.7981 4.1398 19 6 1.4309 -0.0749 2.4973 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.6767 1.9564 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 2.9703 -0.7114 -1.2331 27 1 3.9997 -1.0498 0.4163 28 1 3.8516 0.4373 1.3828 29 1 3.7719 -2.4056 2.4918 30 1 5.1671 -1.3035 2.5799 31 1 3.7765 -1.3105 4.6822 32 1 3.8729 0.2949 3.9137 33 1 -1.8341 -1.1239 5.6438 34 1 1.6415 0.9946 2.4947 35 1 0.3531 -0.2372 2.5038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719671284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:11 Heat of formation + Delta-G solvation = -40.286118 kcal Electronic energy + Delta-G solvation = -15665.325960 eV Core-core repulsion = 13277.547435 eV Total energy + Delta-G solvation = -2387.778525 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34704 -36.45724 -33.07581 -32.49303 -30.73756 -28.92188 -27.27813 -25.16518 -23.37843 -22.07799 -20.10788 -18.85668 -17.03505 -16.25828 -15.50341 -14.51419 -14.42310 -14.10872 -13.90642 -13.41250 -13.04567 -12.58135 -12.32110 -12.20283 -11.95546 -11.64622 -11.52887 -11.32167 -10.93018 -10.84610 -10.52134 -10.33364 -10.17796 -9.94523 -9.67617 -9.44018 -9.28093 -8.61098 -6.94945 -5.94691 -3.30090 3.28191 3.46448 3.48758 4.45361 4.53186 4.84183 5.02017 5.17084 5.25171 5.33741 5.48351 5.55885 5.66858 5.80882 5.87543 5.97072 6.03135 6.12070 6.18358 6.25299 6.26553 6.38153 6.41340 6.48411 6.58361 6.65972 6.74369 6.78045 7.01417 7.86442 7.97548 8.33636 8.95255 9.72697 10.11423 11.21434 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.013979 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.675020 B = 2002.479906 C = 2544.383417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.131 3.869 3 C -0.181 4.181 4 O -0.564 6.564 5 C -0.129 4.129 6 H 0.079 0.921 7 C -0.109 4.109 8 C -0.135 4.135 9 C 0.147 3.853 10 N -0.606 5.606 11 C -0.259 4.259 12 H 0.085 0.915 13 C 0.023 3.977 14 N -0.908 5.908 15 Si 0.877 3.123 16 H -0.286 1.286 17 H -0.303 1.303 18 H -0.270 1.270 19 C 0.134 3.866 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.369 0.631 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.262 0.738 34 H 0.027 0.973 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 4.289 -10.324 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.090 3.910 3 C -0.238 4.238 4 O -0.370 6.370 5 C -0.149 4.149 6 H 0.098 0.902 7 C -0.147 4.147 8 C -0.174 4.174 9 C 0.021 3.979 10 N -0.329 5.329 11 C -0.387 4.387 12 H 0.103 0.897 13 C -0.176 4.176 14 N -0.551 5.551 15 Si 0.707 3.293 16 H -0.213 1.213 17 H -0.231 1.231 18 H -0.195 1.195 19 C 0.009 3.991 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.216 0.784 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.747 4.206 -10.318 13.025 hybrid contribution 0.207 1.006 -0.154 1.039 sum 6.953 5.212 -10.472 13.608 Atomic orbital electron populations 1.21866 0.92947 1.03093 1.02181 1.21219 0.94657 0.90463 0.84615 1.22595 1.01527 0.97247 1.02450 1.86522 1.26151 1.79878 1.44409 1.22337 0.95732 1.01452 0.95415 0.90235 1.21531 0.95374 1.00157 0.97621 1.21986 0.98564 1.00336 0.96504 1.20936 0.84244 0.97270 0.95424 1.44348 1.00919 1.69289 1.18355 1.18943 0.95588 1.12891 1.11302 0.89720 1.25276 0.96330 0.97937 0.98023 1.69833 1.03756 1.36218 1.45337 0.87031 0.77826 0.87353 0.77061 1.21338 1.23097 1.19462 1.21451 0.97660 0.94647 0.85375 0.92475 0.91710 0.90709 0.91293 0.92101 0.92423 0.78358 0.93319 0.92247 0.92007 0.92799 0.91979 0.96139 0.92782 0.95531 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.36 37.16 0.31 -2.09 16 2 C 0.13 2.08 0.93 -90.62 -0.08 2.00 16 3 C -0.18 -2.53 8.09 37.16 0.30 -2.23 16 4 O -0.56 -8.42 12.97 -35.23 -0.46 -8.88 16 5 C -0.13 -2.31 1.94 -90.50 -0.18 -2.49 16 6 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 7 C -0.11 -1.67 4.45 -26.69 -0.12 -1.79 16 8 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 9 C 0.15 2.92 6.52 -3.72 -0.02 2.90 16 10 N -0.61 -14.54 2.77 -172.32 -0.48 -15.02 16 11 C -0.26 -7.32 10.04 -15.06 -0.15 -7.47 16 12 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 13 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 14 N -0.91 -28.05 13.97 55.49 0.78 -27.27 16 15 Si 0.88 22.31 24.35 -169.99 -4.14 18.17 16 16 H -0.29 -6.89 6.00 56.52 0.34 -6.55 16 17 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 18 H -0.27 -6.71 6.46 56.52 0.37 -6.35 16 19 C 0.13 2.92 2.65 -3.71 -0.01 2.91 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.07 1.34 5.76 -51.93 -0.30 1.04 16 23 H 0.07 1.03 6.46 -51.93 -0.34 0.70 16 24 H 0.06 0.75 6.38 -51.93 -0.33 0.42 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.37 4.22 7.50 45.56 0.34 4.56 16 27 H 0.05 0.62 6.83 -51.93 -0.35 0.27 16 28 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 34 H 0.03 0.58 5.18 -51.92 -0.27 0.31 16 35 H 0.07 1.76 3.15 -51.93 -0.16 1.60 16 LS Contribution 256.90 15.07 3.87 3.87 Total: -1.00 -30.86 256.90 -5.41 -36.27 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.77 Total: 2.90 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.21 Total: -10.04 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.30 Total: -42.29 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.46 Total: -8.88 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.86 -5.41 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719671284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.018 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds