Wall clock time and date at job start Sun Mar 29 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46681 * 2 1 4 4 O 1.42902 * 109.47051 * 240.00234 * 2 1 3 5 5 C 1.52997 * 109.47281 * 120.00156 * 2 1 3 6 6 H 1.08999 * 109.49655 * 65.00372 * 5 2 1 7 7 C 1.53046 * 109.49656 * 185.06530 * 5 2 1 8 8 C 1.53040 * 109.53476 * 181.31479 * 7 5 2 9 9 C 1.53187 * 109.31470 * 298.63518 * 8 7 5 10 10 N 1.46917 * 108.77715 * 54.63872 * 9 8 7 11 11 C 1.36936 * 120.63360 * 126.43726 * 10 9 8 12 12 H 1.08001 * 119.99916 * 332.49484 * 11 10 9 13 13 C 1.38816 * 120.00207 * 152.50293 * 11 10 9 14 14 N 1.31617 * 119.99886 * 159.64101 * 13 11 10 15 15 Si 1.86797 * 120.00025 * 339.63908 * 13 11 10 16 16 H 1.48506 * 109.46992 * 95.15079 * 15 13 11 17 17 H 1.48496 * 109.47160 * 215.15493 * 15 13 11 18 18 H 1.48501 * 109.47269 * 335.15378 * 15 13 11 19 19 C 1.46938 * 118.76436 * 306.41176 * 10 9 8 20 20 H 1.08993 * 109.47255 * 60.00105 * 1 2 3 21 21 H 1.09002 * 109.46966 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46793 * 299.99471 * 1 2 3 23 23 H 1.08998 * 109.47375 * 60.00375 * 3 2 1 24 24 H 1.09004 * 109.46598 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47209 * 299.99745 * 3 2 1 26 26 H 0.96697 * 113.99883 * 179.97438 * 4 2 1 27 27 H 1.08999 * 109.45796 * 301.33880 * 7 5 2 28 28 H 1.09001 * 109.45701 * 61.30828 * 7 5 2 29 29 H 1.08997 * 109.49720 * 58.59194 * 8 7 5 30 30 H 1.09002 * 109.49500 * 178.65020 * 8 7 5 31 31 H 1.09003 * 109.58825 * 174.42864 * 9 8 7 32 32 H 1.09004 * 109.58442 * 294.84803 * 9 8 7 33 33 H 0.96996 * 119.99934 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.56209 * 293.78817 * 19 10 9 35 35 H 1.08997 * 109.62008 * 173.36082 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.7520 -1.7716 1.2059 7 6 3.5652 -0.6122 1.3151 8 6 4.0791 -1.3613 2.5467 9 6 3.4937 -0.7217 3.8095 10 7 2.0297 -0.6914 3.6892 11 6 1.2378 -1.2271 4.6695 12 1 1.6108 -2.0323 5.2851 13 6 -0.0445 -0.7353 4.8719 14 7 -0.9383 -1.4677 5.5020 15 14 -0.5013 0.9659 4.2501 16 1 -1.1424 0.8494 2.9156 17 1 -1.4483 1.6025 5.2005 18 1 0.7236 1.7981 4.1398 19 6 1.4309 -0.0749 2.4973 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.6767 1.9564 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 2.9703 -0.7114 -1.2331 27 1 3.9997 -1.0498 0.4163 28 1 3.8516 0.4373 1.3828 29 1 3.7719 -2.4056 2.4918 30 1 5.1671 -1.3035 2.5799 31 1 3.7765 -1.3105 4.6822 32 1 3.8729 0.2949 3.9137 33 1 -1.8341 -1.1239 5.6438 34 1 1.6415 0.9946 2.4947 35 1 0.3531 -0.2372 2.5038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719671284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:11 Heat of formation + Delta-G solvation = -63.194420 kcal Electronic energy + Delta-G solvation = -15666.319339 eV Core-core repulsion = 13277.547435 eV Total energy + Delta-G solvation = -2388.771903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72220 -37.94943 -34.88095 -33.84951 -32.63327 -30.34378 -28.47125 -27.05862 -24.87770 -23.75511 -21.54547 -20.31859 -18.83922 -17.79693 -17.17997 -16.09317 -15.72407 -15.62887 -15.42974 -15.05264 -14.69755 -14.06597 -13.98987 -13.79355 -13.29115 -13.06139 -12.82542 -12.75956 -12.54144 -12.37525 -12.14568 -11.92766 -11.69525 -11.61448 -11.39609 -11.03600 -10.67237 -10.62832 -8.91818 -8.19071 -5.50348 1.25184 1.37150 1.46209 2.38758 3.01081 3.32686 3.33996 3.73582 3.84463 4.00060 4.16001 4.24113 4.33698 4.43333 4.53322 4.67192 4.70147 4.83270 4.84770 4.87976 4.99372 5.03503 5.09404 5.14221 5.20164 5.23636 5.37032 5.41324 5.59505 5.85356 6.10466 6.89114 6.91473 7.61692 8.02185 9.01031 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.013979 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.675020 B = 2002.479906 C = 2544.383417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 C -0.177 4.177 4 O -0.568 6.568 5 C -0.122 4.122 6 H 0.050 0.950 7 C -0.106 4.106 8 C -0.127 4.127 9 C 0.138 3.862 10 N -0.622 5.622 11 C -0.251 4.251 12 H 0.049 0.951 13 C -0.036 4.036 14 N -0.958 5.958 15 Si 0.940 3.060 16 H -0.269 1.269 17 H -0.311 1.311 18 H -0.256 1.256 19 C 0.132 3.868 20 H 0.076 0.924 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.387 0.613 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.038 0.962 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 6.090 -12.791 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.097 3.903 3 C -0.234 4.234 4 O -0.377 6.377 5 C -0.143 4.143 6 H 0.069 0.931 7 C -0.143 4.143 8 C -0.166 4.166 9 C 0.013 3.987 10 N -0.347 5.347 11 C -0.380 4.380 12 H 0.066 0.934 13 C -0.231 4.231 14 N -0.604 5.604 15 Si 0.768 3.232 16 H -0.195 1.195 17 H -0.240 1.240 18 H -0.181 1.181 19 C 0.007 3.993 20 H 0.095 0.905 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.237 0.763 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.813 6.016 -12.825 16.684 hybrid contribution -0.344 0.339 0.620 0.785 sum 8.470 6.355 -12.206 16.158 Atomic orbital electron populations 1.21891 0.94244 1.02164 1.02313 1.21040 0.93864 0.91624 0.83807 1.22555 1.02945 0.95280 1.02638 1.86503 1.27980 1.79837 1.43374 1.22200 0.97905 0.99517 0.94649 0.93138 1.21562 0.92904 1.01359 0.98445 1.21903 1.00598 0.98997 0.95102 1.21176 0.81929 0.98352 0.97211 1.44514 1.02445 1.69424 1.18311 1.18890 0.96023 1.11642 1.11477 0.93362 1.25922 0.96433 1.01456 0.99277 1.69970 1.04248 1.38016 1.48211 0.86004 0.77795 0.82369 0.77007 1.19530 1.23969 1.18067 1.21467 0.96354 0.95258 0.86206 0.90517 0.93266 0.92341 0.92448 0.89860 0.90914 0.76282 0.89742 0.90509 0.93761 0.89058 0.93160 0.94492 0.92974 0.94452 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 8.36 71.98 0.60 -4.13 16 2 C 0.14 3.94 0.93 -10.79 -0.01 3.93 16 3 C -0.18 -4.15 8.09 71.98 0.58 -3.57 16 4 O -0.57 -14.78 12.97 -148.98 -1.93 -16.71 16 5 C -0.12 -4.11 1.94 -10.72 -0.02 -4.14 16 6 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 7 C -0.11 -2.75 4.45 30.62 0.14 -2.62 16 8 C -0.13 -3.77 6.08 30.67 0.19 -3.58 16 9 C 0.14 5.26 6.52 86.36 0.56 5.83 16 10 N -0.62 -29.74 2.77 -699.08 -1.94 -31.67 16 11 C -0.25 -14.62 10.04 84.03 0.84 -13.78 16 12 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 13 C -0.04 -2.17 5.23 84.86 0.44 -1.73 16 14 N -0.96 -61.59 13.97 21.65 0.30 -61.29 16 15 Si 0.94 46.87 24.35 68.60 1.67 48.54 16 16 H -0.27 -12.53 6.00 99.48 0.60 -11.93 16 17 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 18 H -0.26 -12.08 6.46 99.48 0.64 -11.43 16 19 C 0.13 5.56 2.65 86.36 0.23 5.79 16 20 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.06 2.03 5.76 -2.39 -0.01 2.01 16 23 H 0.06 1.50 6.46 -2.39 -0.02 1.48 16 24 H 0.08 1.58 6.38 -2.38 -0.02 1.56 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.39 6.87 7.50 -74.06 -0.56 6.31 16 27 H 0.08 1.67 6.83 -2.39 -0.02 1.65 16 28 H 0.08 1.80 6.43 -2.39 -0.02 1.79 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 32 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.04 1.51 5.18 -2.38 -0.01 1.50 16 35 H 0.05 2.20 3.15 -2.39 -0.01 2.19 16 Total: -1.00 -68.92 256.90 2.00 -66.92 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.35 Total: 12.22 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 3.56 Total: -18.00 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -1.63 Total: -92.96 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.93 Total: -16.71 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.67 Total: 48.54 kcal Total: -68.92 2.00 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719671284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.722 kcal (2) G-P(sol) polarization free energy of solvation -68.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds