Wall clock time and date at job start Sun Mar 29 2020 22:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47158 * 239.99633 * 3 2 1 5 5 H 1.48494 * 109.47119 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46768 * 120.00004 * 3 2 1 7 7 C 1.37883 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99641 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00088 * 0.27854 * 7 2 1 10 10 N 1.46899 * 109.47154 * 179.72120 * 9 7 2 11 11 C 1.46897 * 110.99993 * 294.30645 * 10 9 7 12 12 C 1.53243 * 109.33951 * 172.74663 * 11 10 9 13 13 N 1.47082 * 108.52235 * 53.82451 * 12 11 10 14 14 C 1.34772 * 120.87942 * 128.79775 * 13 12 11 15 15 N 1.34777 * 119.99929 * 355.02517 * 14 13 12 16 16 O 1.21589 * 119.99956 * 175.03223 * 14 13 12 17 17 C 1.47081 * 118.23513 * 308.81653 * 13 12 11 18 18 C 1.46890 * 111.00087 * 169.99539 * 10 9 7 19 19 H 0.97000 * 119.99464 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.46878 * 299.72609 * 9 7 2 21 21 H 1.09003 * 109.47101 * 59.72251 * 9 7 2 22 22 H 1.09002 * 109.49146 * 292.69807 * 11 10 9 23 23 H 1.08994 * 109.49481 * 52.78246 * 11 10 9 24 24 H 1.09005 * 109.62293 * 294.11595 * 12 11 10 25 25 H 1.08995 * 109.62867 * 173.53985 * 12 11 10 26 26 H 0.96995 * 120.00477 * 5.07193 * 15 14 13 27 27 H 0.97003 * 119.99427 * 185.07912 * 15 14 13 28 28 H 1.08997 * 109.63062 * 291.47451 * 17 13 12 29 29 H 1.09000 * 109.78543 * 170.99330 * 17 13 12 30 30 H 1.08999 * 109.49907 * 307.21948 * 18 10 9 31 31 H 1.09000 * 109.49307 * 67.30086 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 -0.0052 10 7 2.2054 -3.6158 -0.0102 11 6 2.9765 -3.6436 -1.2601 12 6 4.0787 -4.7029 -1.1530 13 7 3.4612 -5.9831 -0.7744 14 6 3.7112 -7.1060 -1.4765 15 7 4.4553 -7.0475 -2.5987 16 8 3.2655 -8.1718 -1.0975 17 6 2.5634 -6.0050 0.3904 18 6 1.5209 -4.8945 0.2224 19 1 -0.4849 0.8401 -0.0004 20 1 0.6242 -2.5607 0.8844 21 1 0.6242 -2.5530 -0.8955 22 1 2.3147 -3.8902 -2.0904 23 1 3.4270 -2.6660 -1.4315 24 1 4.8000 -4.4050 -0.3919 25 1 4.5799 -4.8084 -2.1151 26 1 4.8719 -6.2119 -2.8615 27 1 4.5740 -7.8411 -3.1438 28 1 3.1390 -5.8324 1.2997 29 1 2.0626 -6.9712 0.4520 30 1 0.9157 -4.8241 1.1262 31 1 0.8793 -5.1237 -0.6284 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722202815.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:01 Heat of formation + Delta-G solvation = -44.144588 kcal Electronic energy + Delta-G solvation = -14518.759234 eV Core-core repulsion = 12027.273049 eV Total energy + Delta-G solvation = -2491.486184 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.30410 -39.00712 -35.96663 -34.85520 -34.06071 -31.92894 -29.89619 -27.19045 -24.69265 -23.97569 -22.39530 -20.42960 -19.31551 -18.48553 -17.91265 -16.78074 -16.46300 -16.08494 -15.97590 -15.39899 -15.29624 -14.95501 -14.38687 -14.03177 -13.51015 -13.01780 -12.79699 -12.55732 -12.40607 -12.30222 -12.14129 -11.77813 -11.30613 -11.28473 -10.70948 -10.59810 -9.68678 -9.04105 -8.19007 -6.29670 1.44707 1.47773 1.55517 1.79742 2.11899 2.42332 3.13095 3.19198 3.27569 3.99148 4.06848 4.18509 4.25780 4.45481 4.56084 4.76181 4.86339 4.95516 5.03293 5.18703 5.24097 5.42523 5.64468 5.87339 6.02574 6.04145 6.28867 6.56720 6.86126 6.90451 7.40503 7.60450 8.92216 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060085 B = 0.006940 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.898457 B = 4033.341505 C = 4321.134508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.207 3.793 10 N -0.538 5.538 11 C 0.049 3.951 12 C 0.124 3.876 13 N -0.629 5.629 14 C 0.704 3.296 15 N -0.848 5.848 16 O -0.644 6.644 17 C 0.144 3.856 18 C 0.042 3.958 19 H 0.264 0.736 20 H 0.004 0.996 21 H -0.041 1.041 22 H 0.014 0.986 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.411 0.589 27 H 0.421 0.579 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 -8.278 -4.693 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.561 4.561 8 H 0.089 0.911 9 C 0.081 3.919 10 N -0.263 5.263 11 C -0.080 4.080 12 C 0.002 3.998 13 N -0.367 5.367 14 C 0.404 3.596 15 N -0.419 5.419 16 O -0.526 6.526 17 C 0.020 3.980 18 C -0.087 4.087 19 H 0.072 0.928 20 H 0.022 0.978 21 H -0.023 1.023 22 H 0.032 0.968 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.131 0.869 26 H 0.244 0.756 27 H 0.254 0.746 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 10.008 -8.689 -3.947 13.829 hybrid contribution -0.676 0.949 -0.928 1.489 sum 9.332 -7.740 -4.875 13.068 Atomic orbital electron populations 1.70096 1.07943 1.27986 1.51760 1.25957 0.95683 1.03371 0.94782 0.85400 0.78063 0.77668 0.79273 1.18826 1.21364 1.19251 1.21444 0.93889 0.90649 1.50083 0.91070 1.19384 0.90130 0.88976 0.93397 1.61998 1.27005 1.02454 1.34850 1.22391 0.95706 1.00162 0.89787 1.21916 0.94643 0.80917 1.02367 1.47397 1.49689 1.07907 1.31656 1.16044 0.79375 0.83207 0.80998 1.42911 1.55756 1.17696 1.25546 1.90894 1.59904 1.29542 1.72305 1.21470 0.90804 0.98085 0.87604 1.22468 0.95677 0.90084 1.00455 0.92751 0.97763 1.02349 0.96759 0.89386 0.89598 0.86892 0.75608 0.74557 0.90137 0.89366 0.89960 0.96757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.71 13.29 21.45 0.28 -55.43 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.52 -28.36 8.41 25.60 0.22 -28.15 16 8 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 9 C 0.21 10.81 4.72 85.56 0.40 11.21 16 10 N -0.54 -22.23 4.62 -899.85 -4.16 -26.39 16 11 C 0.05 1.68 5.46 86.39 0.47 2.15 16 12 C 0.12 3.08 6.59 86.35 0.57 3.64 16 13 N -0.63 -17.93 3.01 -835.92 -2.52 -20.45 16 14 C 0.70 20.22 8.58 179.06 1.54 21.76 16 15 N -0.85 -15.33 8.79 -184.75 -1.62 -16.95 16 16 O -0.64 -23.85 16.66 -3.99 -0.07 -23.91 16 17 C 0.14 4.44 6.58 86.35 0.57 5.01 16 18 C 0.04 1.54 5.62 86.38 0.49 2.02 16 19 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 20 H 0.00 0.24 7.97 -2.39 -0.02 0.22 16 21 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 22 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.09 3.20 6.67 -2.39 -0.02 3.19 16 24 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.11 1.84 5.63 -2.39 -0.01 1.83 16 26 H 0.41 5.07 6.33 -92.71 -0.59 4.48 16 27 H 0.42 6.19 8.93 -92.71 -0.83 5.36 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 2.76 7.11 -2.39 -0.02 2.74 16 30 H 0.08 2.93 7.99 -2.39 -0.02 2.91 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -70.02 255.39 -1.61 -71.63 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.27 Total: 8.72 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 4.71 Total: 18.11 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -8.01 Total: -119.21 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.07 Total: -23.91 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.02 -1.61 -71.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722202815.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.484 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds