Wall clock time and date at job start Sun Mar 29 2020 21:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 O 1.45208 * 109.46981 * 119.99204 * 2 1 3 5 5 C 1.34634 * 116.99817 * 90.00114 * 4 2 1 6 6 O 1.21513 * 119.99817 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99987 * 180.02562 * 5 4 2 8 8 C 1.47582 * 134.48994 * 180.02562 * 7 5 4 9 9 C 1.53950 * 86.11527 * 155.35548 * 8 7 5 10 10 C 1.50698 * 113.74185 * 269.15304 * 9 8 7 11 11 H 1.08004 * 119.99782 * 358.07289 * 10 9 8 12 12 C 1.37878 * 120.00154 * 178.07233 * 10 9 8 13 13 N 1.31517 * 119.99673 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47027 * 60.00182 * 14 12 10 16 16 H 1.48504 * 109.47302 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47210 * 300.00668 * 14 12 10 18 18 C 1.47805 * 134.45584 * 359.86511 * 7 5 4 19 19 H 1.08998 * 109.46966 * 60.00848 * 1 2 3 20 20 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47396 * 300.00467 * 1 2 3 22 22 H 1.08993 * 109.47450 * 239.99039 * 2 1 3 23 23 H 1.09002 * 109.47192 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46595 * 299.99280 * 3 2 1 25 25 H 1.08998 * 109.47333 * 59.99495 * 3 2 1 26 26 H 1.08999 * 113.77186 * 41.05506 * 8 7 5 27 27 H 1.09004 * 113.76624 * 269.64983 * 8 7 5 28 28 H 1.09002 * 113.74276 * 137.95197 * 9 8 7 29 29 H 0.96999 * 119.99516 * 179.97438 * 13 12 10 30 30 H 1.08999 * 113.77157 * 90.38364 * 18 7 5 31 31 H 1.09002 * 113.84143 * 318.91627 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2177 -2.0114 1.0851 6 8 1.9976 -2.5820 0.0351 7 7 2.6658 -2.7069 2.1490 8 6 2.9920 -4.1251 2.3947 9 6 3.9205 -3.6100 3.5094 10 6 5.3307 -3.3437 3.0497 11 1 5.6128 -3.5469 2.0271 12 6 6.2608 -2.8405 3.9344 13 7 5.9174 -2.5935 5.1797 14 14 8.0090 -2.5111 3.3648 15 1 7.9910 -1.5185 2.2603 16 1 8.8066 -1.9770 4.4979 17 1 8.6195 -3.7763 2.8833 18 6 3.0305 -2.3543 3.5373 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8898 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 3.5196 -4.6039 1.5697 27 1 2.1499 -4.7125 2.7608 28 1 3.8763 -4.1999 4.4249 29 1 6.5718 -2.2399 5.8022 30 1 2.1999 -2.4201 4.2400 31 1 3.5889 -1.4221 3.6229 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849433313.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:17 Heat of formation + Delta-G solvation = -57.096709 kcal Electronic energy + Delta-G solvation = -14459.570073 eV Core-core repulsion = 11935.229491 eV Total energy + Delta-G solvation = -2524.340581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85311 -38.03624 -35.76524 -32.88661 -32.48896 -28.89786 -27.19280 -25.28877 -25.12655 -21.95539 -20.36309 -19.06981 -17.33770 -16.37686 -16.23937 -15.66798 -14.60216 -14.41671 -14.07524 -13.76564 -12.88652 -12.54354 -12.36819 -12.23078 -11.98551 -11.78654 -11.51638 -11.08531 -10.86168 -10.78320 -10.65661 -10.28593 -10.13680 -9.68082 -9.52427 -9.22652 -8.56833 -7.82643 -6.15947 -4.19477 2.71654 3.28357 3.32519 3.36459 3.56780 4.35385 4.51695 4.95825 5.07991 5.14704 5.30744 5.57063 5.68672 5.78522 5.89933 6.01752 6.12197 6.14132 6.22259 6.25046 6.44030 6.48318 6.61140 6.96638 7.07994 7.45248 7.80537 8.24396 8.59096 8.83098 9.00897 9.46108 10.94158 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.008460 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.126018 B = 3308.876856 C = 3662.103664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 C -0.149 4.149 4 O -0.364 6.364 5 C 0.662 3.338 6 O -0.600 6.600 7 N -0.611 5.611 8 C 0.121 3.879 9 C 0.036 3.964 10 C -0.506 4.506 11 H 0.060 0.940 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.105 3.895 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.264 0.736 30 H 0.058 0.942 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 4.755 -4.857 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 C -0.206 4.206 4 O -0.279 6.279 5 C 0.418 3.582 6 O -0.492 6.492 7 N -0.351 5.351 8 C 0.000 4.000 9 C 0.017 3.983 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.017 4.017 19 H 0.088 0.912 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.307 4.827 -5.184 10.177 hybrid contribution 0.793 0.346 -0.360 0.937 sum -6.514 5.173 -5.544 9.997 Atomic orbital electron populations 1.22198 0.95003 1.02905 1.02359 1.22513 0.93912 0.92368 0.87121 1.21882 1.02339 0.93774 1.02589 1.86344 1.79901 1.21040 1.40604 1.17728 0.76538 0.80444 0.83534 1.90876 1.59461 1.70205 1.28674 1.48892 1.64752 1.10881 1.10622 1.23580 0.96784 0.80423 0.99180 1.20451 0.92886 0.91455 0.93555 1.20750 0.93084 1.43728 0.96784 0.92217 1.24974 0.98908 0.94989 0.94735 1.69933 1.35092 1.43781 1.03655 0.86590 0.84031 0.78815 0.78229 1.20211 1.21140 1.20024 1.23672 0.96157 1.03703 0.78202 0.91164 0.91980 0.91897 0.89866 0.91614 0.90698 0.91598 0.90928 0.91586 0.92148 0.92609 0.92376 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.55 37.16 0.35 -1.85 16 2 C 0.10 1.53 3.19 -26.73 -0.09 1.44 16 3 C -0.15 -1.84 9.57 37.16 0.36 -1.49 16 4 O -0.36 -7.37 9.87 -40.31 -0.40 -7.77 16 5 C 0.66 15.07 8.89 54.05 0.48 15.55 16 6 O -0.60 -14.58 16.33 -19.28 -0.31 -14.89 16 7 N -0.61 -13.80 3.53 -184.05 -0.65 -14.45 16 8 C 0.12 2.54 8.40 -2.96 -0.02 2.52 16 9 C 0.04 0.84 3.67 -90.85 -0.33 0.51 16 10 C -0.51 -13.46 8.68 -34.44 -0.30 -13.76 16 11 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -24.35 13.29 55.43 0.74 -23.62 16 14 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.11 2.34 8.45 -2.85 -0.02 2.32 16 19 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.08 1.40 7.16 -51.93 -0.37 1.03 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.89 8.09 -51.93 -0.42 1.47 16 LS Contribution 272.46 15.07 4.11 4.11 Total: -1.00 -30.04 272.46 -5.77 -35.81 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.56 Total: -2.01 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 0.33 Total: 6.93 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.09 Total: -38.07 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.71 Total: -22.66 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.04 -5.77 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849433313.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.282 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds