Wall clock time and date at job start Sun Mar 29 2020 21:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 O 1.45208 * 109.46981 * 119.99204 * 2 1 3 5 5 C 1.34634 * 116.99817 * 90.00114 * 4 2 1 6 6 O 1.21513 * 119.99817 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99987 * 180.02562 * 5 4 2 8 8 C 1.47582 * 134.48994 * 180.02562 * 7 5 4 9 9 C 1.53950 * 86.11527 * 155.35548 * 8 7 5 10 10 C 1.50698 * 113.74185 * 269.15304 * 9 8 7 11 11 H 1.08004 * 119.99782 * 358.07289 * 10 9 8 12 12 C 1.37878 * 120.00154 * 178.07233 * 10 9 8 13 13 N 1.31517 * 119.99673 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47027 * 60.00182 * 14 12 10 16 16 H 1.48504 * 109.47302 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47210 * 300.00668 * 14 12 10 18 18 C 1.47805 * 134.45584 * 359.86511 * 7 5 4 19 19 H 1.08998 * 109.46966 * 60.00848 * 1 2 3 20 20 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47396 * 300.00467 * 1 2 3 22 22 H 1.08993 * 109.47450 * 239.99039 * 2 1 3 23 23 H 1.09002 * 109.47192 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46595 * 299.99280 * 3 2 1 25 25 H 1.08998 * 109.47333 * 59.99495 * 3 2 1 26 26 H 1.08999 * 113.77186 * 41.05506 * 8 7 5 27 27 H 1.09004 * 113.76624 * 269.64983 * 8 7 5 28 28 H 1.09002 * 113.74276 * 137.95197 * 9 8 7 29 29 H 0.96999 * 119.99516 * 179.97438 * 13 12 10 30 30 H 1.08999 * 113.77157 * 90.38364 * 18 7 5 31 31 H 1.09002 * 113.84143 * 318.91627 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2177 -2.0114 1.0851 6 8 1.9976 -2.5820 0.0351 7 7 2.6658 -2.7069 2.1490 8 6 2.9920 -4.1251 2.3947 9 6 3.9205 -3.6100 3.5094 10 6 5.3307 -3.3437 3.0497 11 1 5.6128 -3.5469 2.0271 12 6 6.2608 -2.8405 3.9344 13 7 5.9174 -2.5935 5.1797 14 14 8.0090 -2.5111 3.3648 15 1 7.9910 -1.5185 2.2603 16 1 8.8066 -1.9770 4.4979 17 1 8.6195 -3.7763 2.8833 18 6 3.0305 -2.3543 3.5373 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8898 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 3.5196 -4.6039 1.5697 27 1 2.1499 -4.7125 2.7608 28 1 3.8763 -4.1999 4.4249 29 1 6.5718 -2.2399 5.8022 30 1 2.1999 -2.4201 4.2400 31 1 3.5889 -1.4221 3.6229 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849433313.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:17 Heat of formation + Delta-G solvation = -75.745796 kcal Electronic energy + Delta-G solvation = -14460.378758 eV Core-core repulsion = 11935.229491 eV Total energy + Delta-G solvation = -2525.149266 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52814 -39.72521 -37.42745 -34.63543 -34.04591 -30.71257 -28.20909 -27.22631 -26.90552 -23.48306 -21.88172 -20.79270 -19.06412 -18.31427 -17.90135 -17.34315 -16.53119 -15.86623 -15.60190 -15.21509 -14.35719 -14.28559 -13.83927 -13.61754 -13.28582 -13.17460 -12.96753 -12.75640 -12.66518 -12.61253 -12.18628 -11.89124 -11.60654 -11.43331 -11.41955 -11.13142 -10.59194 -9.59294 -8.20049 -6.28695 1.14869 1.42159 1.43015 1.50677 1.81482 2.41019 2.94312 3.10868 3.83614 3.96163 4.13770 4.17388 4.41729 4.48356 4.57439 4.66907 4.67870 4.77329 4.78739 4.81385 5.01067 5.10388 5.13951 5.21613 5.48264 5.54634 5.75985 6.27318 6.76711 6.83501 7.28147 7.39414 8.89451 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.008460 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.126018 B = 3308.876856 C = 3662.103664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 C -0.142 4.142 4 O -0.374 6.374 5 C 0.657 3.343 6 O -0.622 6.622 7 N -0.620 5.620 8 C 0.129 3.871 9 C 0.025 3.975 10 C -0.524 4.524 11 H 0.045 0.955 12 C 0.026 3.974 13 N -0.910 5.910 14 Si 0.950 3.050 15 H -0.281 1.281 16 H -0.278 1.278 17 H -0.269 1.269 18 C 0.117 3.883 19 H 0.104 0.896 20 H 0.040 0.960 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.266 0.734 30 H 0.088 0.912 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 5.551 -5.175 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.199 4.199 4 O -0.288 6.288 5 C 0.414 3.586 6 O -0.516 6.516 7 N -0.360 5.360 8 C 0.009 3.991 9 C 0.006 3.994 10 C -0.562 4.562 11 H 0.063 0.937 12 C -0.175 4.175 13 N -0.548 5.548 14 Si 0.775 3.225 15 H -0.207 1.207 16 H -0.203 1.203 17 H -0.194 1.194 18 C -0.006 4.006 19 H 0.122 0.878 20 H 0.059 0.941 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.129 0.871 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.893 5.630 -5.501 11.147 hybrid contribution 0.944 0.127 -0.296 0.997 sum -6.949 5.757 -5.796 10.725 Atomic orbital electron populations 1.22171 0.92797 1.02191 1.04541 1.23034 0.95856 0.93465 0.85021 1.21916 1.01593 0.91632 1.04721 1.86351 1.79901 1.19688 1.42893 1.17847 0.76383 0.81239 0.83146 1.90846 1.60494 1.70924 1.29362 1.49001 1.64766 1.11565 1.10715 1.23595 0.97397 0.80257 0.97865 1.20400 0.92266 0.92524 0.94242 1.20988 0.95018 1.43925 0.96229 0.93664 1.25602 1.02131 0.94869 0.94889 1.69999 1.36121 1.44363 1.04304 0.85744 0.80299 0.78633 0.77782 1.20675 1.20280 1.19414 1.23532 0.96570 1.01682 0.78782 0.87772 0.94094 0.90891 0.91461 0.92826 0.87092 0.90858 0.91762 0.87858 0.92573 0.92452 0.89423 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.55 71.98 0.69 -3.20 16 2 C 0.08 2.47 3.19 30.59 0.10 2.57 16 3 C -0.14 -3.20 9.57 71.98 0.69 -2.51 16 4 O -0.37 -14.97 9.87 -55.43 -0.55 -15.52 16 5 C 0.66 29.83 8.89 129.79 1.15 30.99 16 6 O -0.62 -30.28 16.33 19.80 0.32 -29.95 16 7 N -0.62 -27.66 3.53 -966.61 -3.41 -31.08 16 8 C 0.13 5.30 8.40 86.49 0.73 6.03 16 9 C 0.02 1.16 3.67 -10.88 -0.04 1.12 16 10 C -0.52 -28.06 8.68 25.60 0.22 -27.84 16 11 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 12 C 0.03 1.38 5.46 84.65 0.46 1.84 16 13 N -0.91 -49.82 13.29 21.45 0.28 -49.54 16 14 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 C 0.12 5.13 8.45 86.44 0.73 5.86 16 19 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 20 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.07 2.25 7.16 -2.39 -0.02 2.23 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 2.73 8.09 -2.39 -0.02 2.71 16 27 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.05 2.60 8.09 -2.39 -0.02 2.58 16 Total: -1.00 -63.85 272.46 4.50 -59.35 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.10 Total: 7.08 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 4.73 Total: 14.84 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.13 Total: -80.62 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.22 Total: -45.47 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -63.85 4.50 -59.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849433313.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.396 kcal (2) G-P(sol) polarization free energy of solvation -63.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds