Wall clock time and date at job start Sun Mar 29 2020 21:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47237 * 2 1 4 4 C 1.36938 * 119.99808 * 84.69094 * 3 2 1 5 5 H 1.07999 * 119.99876 * 37.52282 * 4 3 2 6 6 C 1.38814 * 119.99781 * 217.51732 * 4 3 2 7 7 N 1.31615 * 120.00043 * 213.22705 * 6 4 3 8 8 Si 1.86803 * 119.99905 * 33.50973 * 6 4 3 9 9 H 1.48501 * 109.47159 * 94.38143 * 8 6 4 10 10 H 1.48497 * 109.47088 * 214.38208 * 8 6 4 11 11 H 1.48499 * 109.47112 * 334.38447 * 8 6 4 12 12 C 1.46502 * 120.00007 * 264.68739 * 3 2 1 13 13 C 1.52991 * 109.47058 * 273.81009 * 12 3 2 14 14 H 1.09003 * 110.01391 * 305.07677 * 13 12 3 15 15 C 1.54274 * 110.02552 * 183.65037 * 13 12 3 16 16 C 1.54713 * 102.25935 * 225.51472 * 15 13 12 17 17 C 1.51666 * 103.01148 * 25.21146 * 16 15 13 18 18 O 1.20819 * 125.69994 * 151.43517 * 17 16 15 19 19 O 1.34008 * 108.60336 * 331.46727 * 17 16 15 20 20 H 1.09006 * 109.46972 * 64.52767 * 1 2 3 21 21 H 1.08994 * 109.47362 * 184.52802 * 1 2 3 22 22 H 1.09006 * 109.46756 * 304.53018 * 1 2 3 23 23 H 1.09003 * 109.46775 * 239.99788 * 2 1 3 24 24 H 1.09001 * 109.46460 * 120.00306 * 2 1 3 25 25 H 0.97004 * 120.00054 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46925 * 33.80958 * 12 3 2 27 27 H 1.08999 * 109.46861 * 153.80657 * 12 3 2 28 28 H 1.09000 * 110.84355 * 343.71005 * 15 13 12 29 29 H 1.09004 * 110.84500 * 107.32293 * 15 13 12 30 30 H 1.08999 * 110.71165 * 266.82404 * 16 15 13 31 31 H 1.09002 * 110.70793 * 143.58944 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 1.1809 5 1 2.4806 1.5489 2.0685 6 6 1.8360 3.4158 1.2369 7 7 2.5039 4.2093 2.0471 8 14 0.4693 4.1082 0.1682 9 1 -0.7978 4.1375 0.9422 10 1 0.8225 5.4870 -0.2555 11 1 0.2965 3.2506 -1.0318 12 6 2.3733 2.0326 -1.2633 13 6 3.8245 1.7020 -1.6175 14 1 4.4817 1.9760 -0.7922 15 6 4.2405 2.4551 -2.8980 16 6 4.9588 1.3511 -3.7097 17 6 4.3367 0.0752 -3.1757 18 8 4.2063 -0.9566 -3.7906 19 8 3.9552 0.2836 -1.9081 20 1 -0.3633 0.4420 -0.9278 21 1 -0.3634 -1.0244 0.0811 22 1 -0.3633 0.5826 0.8467 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.2895 5.1546 2.0860 26 1 1.7153 1.6736 -2.0546 27 1 2.2615 3.1119 -1.1595 28 1 3.3652 2.8229 -3.4333 29 1 4.9242 3.2710 -2.6633 30 1 6.0315 1.3671 -3.5170 31 1 4.7560 1.4623 -4.7749 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851744311.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:18 Heat of formation + Delta-G solvation = -64.364351 kcal Electronic energy + Delta-G solvation = -14900.423040 eV Core-core repulsion = 12375.767310 eV Total energy + Delta-G solvation = -2524.655730 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.56117 -37.40633 -35.86436 -32.84946 -31.97348 -30.35679 -28.10216 -24.66288 -23.56435 -21.87134 -20.65912 -19.97136 -17.04863 -16.93259 -16.54496 -15.38724 -14.95236 -14.44893 -14.01548 -13.35297 -13.28471 -13.15049 -12.83868 -12.24173 -12.05663 -11.68073 -11.55840 -11.25784 -11.15321 -10.74173 -10.56264 -10.36717 -10.01286 -9.94012 -9.76831 -9.57504 -8.51956 -6.88012 -6.15128 -3.42873 2.32448 3.27402 3.42015 3.46905 3.67127 4.18443 4.44897 4.52026 4.77378 4.97606 5.15391 5.33519 5.55371 5.61046 5.82978 5.86552 6.00417 6.03562 6.32894 6.34268 6.44554 6.57203 6.65855 6.88220 7.13062 7.30668 7.74402 7.95411 8.34802 8.93838 9.64653 10.10463 11.00748 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032641 B = 0.011397 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.617397 B = 2456.241970 C = 2849.487088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 N -0.597 5.597 4 C -0.275 4.275 5 H 0.078 0.922 6 C 0.044 3.956 7 N -0.880 5.880 8 Si 0.844 3.156 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.263 1.263 12 C 0.146 3.854 13 C 0.062 3.938 14 H 0.113 0.887 15 C -0.153 4.153 16 C -0.188 4.188 17 C 0.479 3.521 18 O -0.475 6.475 19 O -0.332 6.332 20 H 0.038 0.962 21 H 0.039 0.961 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.264 0.736 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -1.855 -9.485 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.318 5.318 4 C -0.403 4.403 5 H 0.095 0.905 6 C -0.158 4.158 7 N -0.519 5.519 8 Si 0.671 3.329 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.187 1.187 12 C 0.018 3.982 13 C 0.005 3.995 14 H 0.131 0.869 15 C -0.191 4.191 16 C -0.226 4.226 17 C 0.320 3.680 18 O -0.361 6.361 19 O -0.248 6.248 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.473 -2.327 -9.473 10.063 hybrid contribution -0.816 0.810 -0.535 1.269 sum 1.657 -1.517 -10.008 10.257 Atomic orbital electron populations 1.22320 0.99880 0.99439 1.01230 1.20918 0.91367 0.86341 0.99597 1.44077 1.73898 1.11190 1.02619 1.18718 1.40439 0.92071 0.89085 0.90484 1.25492 0.97636 0.96281 0.96390 1.70050 1.37260 1.04448 1.40179 0.87382 0.85990 0.77736 0.81811 1.21580 1.22046 1.18730 1.21583 0.89728 0.97760 0.89085 1.24851 1.03378 0.74329 0.96976 0.86869 1.23032 1.01592 0.98388 0.96117 1.23069 1.02617 0.94257 1.02695 1.23259 0.74835 0.89002 0.80871 1.90661 1.54223 1.32093 1.59122 1.86882 1.79375 1.30180 1.28330 0.94304 0.94195 0.92516 0.93324 0.93490 0.92660 0.93875 0.90568 0.89625 0.88531 0.87186 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 10.21 37.16 0.38 -2.86 16 2 C 0.14 2.97 6.20 -4.04 -0.03 2.95 16 3 N -0.60 -13.74 2.05 -173.24 -0.35 -14.09 16 4 C -0.28 -7.32 9.78 -15.06 -0.15 -7.47 16 5 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 6 C 0.04 1.19 5.01 -17.43 -0.09 1.10 16 7 N -0.88 -25.28 13.97 55.49 0.78 -24.51 16 8 Si 0.84 20.36 26.32 -169.99 -4.47 15.88 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.01 5.91 56.52 0.33 -5.68 16 12 C 0.15 2.94 3.51 -4.05 -0.01 2.93 16 13 C 0.06 1.07 3.91 -26.07 -0.10 0.97 16 14 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 15 C -0.15 -1.92 6.69 -25.16 -0.17 -2.09 16 16 C -0.19 -2.21 6.97 -26.51 -0.18 -2.39 16 17 C 0.48 7.95 8.62 36.48 0.31 8.26 16 18 O -0.47 -9.19 18.00 -18.37 -0.33 -9.52 16 19 O -0.33 -6.11 9.30 -38.29 -0.36 -6.46 16 20 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.05 0.98 6.92 -51.93 -0.36 0.62 16 24 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 27 H 0.08 1.61 4.57 -51.93 -0.24 1.37 16 28 H 0.09 1.00 7.79 -51.93 -0.40 0.60 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 259.49 15.07 3.91 3.91 Total: -1.00 -30.21 259.49 -5.29 -35.51 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.43 Total: -2.12 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.03 Total: 1.40 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.42 Total: -38.60 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.69 Total: -15.98 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.47 Total: 15.88 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.21 -5.29 -35.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851744311.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.859 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds