Wall clock time and date at job start Sun Mar 29 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47237 * 2 1 4 4 C 1.36938 * 119.99808 * 84.69094 * 3 2 1 5 5 H 1.07999 * 119.99876 * 37.52282 * 4 3 2 6 6 C 1.38814 * 119.99781 * 217.51732 * 4 3 2 7 7 N 1.31615 * 120.00043 * 213.22705 * 6 4 3 8 8 Si 1.86803 * 119.99905 * 33.50973 * 6 4 3 9 9 H 1.48501 * 109.47159 * 94.38143 * 8 6 4 10 10 H 1.48497 * 109.47088 * 214.38208 * 8 6 4 11 11 H 1.48499 * 109.47112 * 334.38447 * 8 6 4 12 12 C 1.46502 * 120.00007 * 264.68739 * 3 2 1 13 13 C 1.52991 * 109.47058 * 273.81009 * 12 3 2 14 14 H 1.09003 * 110.01391 * 305.07677 * 13 12 3 15 15 C 1.54274 * 110.02552 * 183.65037 * 13 12 3 16 16 C 1.54713 * 102.25935 * 225.51472 * 15 13 12 17 17 C 1.51666 * 103.01148 * 25.21146 * 16 15 13 18 18 O 1.20819 * 125.69994 * 151.43517 * 17 16 15 19 19 O 1.34008 * 108.60336 * 331.46727 * 17 16 15 20 20 H 1.09006 * 109.46972 * 64.52767 * 1 2 3 21 21 H 1.08994 * 109.47362 * 184.52802 * 1 2 3 22 22 H 1.09006 * 109.46756 * 304.53018 * 1 2 3 23 23 H 1.09003 * 109.46775 * 239.99788 * 2 1 3 24 24 H 1.09001 * 109.46460 * 120.00306 * 2 1 3 25 25 H 0.97004 * 120.00054 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46925 * 33.80958 * 12 3 2 27 27 H 1.08999 * 109.46861 * 153.80657 * 12 3 2 28 28 H 1.09000 * 110.84355 * 343.71005 * 15 13 12 29 29 H 1.09004 * 110.84500 * 107.32293 * 15 13 12 30 30 H 1.08999 * 110.71165 * 266.82404 * 16 15 13 31 31 H 1.09002 * 110.70793 * 143.58944 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 1.1809 5 1 2.4806 1.5489 2.0685 6 6 1.8360 3.4158 1.2369 7 7 2.5039 4.2093 2.0471 8 14 0.4693 4.1082 0.1682 9 1 -0.7978 4.1375 0.9422 10 1 0.8225 5.4870 -0.2555 11 1 0.2965 3.2506 -1.0318 12 6 2.3733 2.0326 -1.2633 13 6 3.8245 1.7020 -1.6175 14 1 4.4817 1.9760 -0.7922 15 6 4.2405 2.4551 -2.8980 16 6 4.9588 1.3511 -3.7097 17 6 4.3367 0.0752 -3.1757 18 8 4.2063 -0.9566 -3.7906 19 8 3.9552 0.2836 -1.9081 20 1 -0.3633 0.4420 -0.9278 21 1 -0.3634 -1.0244 0.0811 22 1 -0.3633 0.5826 0.8467 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.2895 5.1546 2.0860 26 1 1.7153 1.6736 -2.0546 27 1 2.2615 3.1119 -1.1595 28 1 3.3652 2.8229 -3.4333 29 1 4.9242 3.2710 -2.6633 30 1 6.0315 1.3671 -3.5170 31 1 4.7560 1.4623 -4.7749 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851744311.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:17 Heat of formation + Delta-G solvation = -83.064266 kcal Electronic energy + Delta-G solvation = -14901.233929 eV Core-core repulsion = 12375.767310 eV Total energy + Delta-G solvation = -2525.466619 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.86711 -38.85176 -37.56870 -34.04088 -33.98260 -31.86221 -29.71601 -26.32933 -25.19533 -23.07413 -22.13479 -21.57699 -18.84003 -18.30091 -17.88255 -16.99231 -16.61073 -16.11427 -15.44140 -14.98893 -14.79381 -14.66103 -14.28197 -13.95812 -13.35071 -13.15227 -13.05721 -12.77872 -12.61900 -12.31130 -12.19065 -12.03504 -11.65709 -11.55934 -11.28643 -11.13411 -10.57349 -8.76549 -8.24320 -5.49905 1.05336 1.34424 1.47601 1.54903 2.35240 2.44093 2.92521 3.11412 3.34767 3.58545 3.85509 4.05597 4.30760 4.40736 4.43351 4.67070 4.71695 4.77168 4.83240 4.93937 4.98536 5.05378 5.16467 5.23455 5.50811 5.93029 6.02614 6.21496 6.46974 7.00190 7.64941 8.11806 8.95946 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032641 B = 0.011397 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.617397 B = 2456.241970 C = 2849.487088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 N -0.609 5.609 4 C -0.268 4.268 5 H 0.035 0.965 6 C 0.000 4.000 7 N -0.926 5.926 8 Si 0.909 3.091 9 H -0.301 1.301 10 H -0.287 1.287 11 H -0.241 1.241 12 C 0.139 3.861 13 C 0.065 3.935 14 H 0.093 0.907 15 C -0.142 4.142 16 C -0.168 4.168 17 C 0.472 3.528 18 O -0.510 6.510 19 O -0.359 6.359 20 H 0.043 0.957 21 H 0.068 0.932 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -1.320 -12.013 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 N -0.332 5.332 4 C -0.397 4.397 5 H 0.052 0.948 6 C -0.199 4.199 7 N -0.567 5.567 8 Si 0.735 3.265 9 H -0.229 1.229 10 H -0.214 1.214 11 H -0.165 1.165 12 C 0.013 3.987 13 C 0.008 3.992 14 H 0.111 0.889 15 C -0.180 4.180 16 C -0.206 4.206 17 C 0.316 3.684 18 O -0.399 6.399 19 O -0.275 6.275 20 H 0.062 0.938 21 H 0.087 0.913 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.290 -1.801 -12.037 12.385 hybrid contribution -0.706 0.531 0.313 0.937 sum 1.584 -1.271 -11.724 11.899 Atomic orbital electron populations 1.22208 0.98192 1.01037 1.00553 1.20949 0.92688 0.85255 0.99393 1.44174 1.74788 1.11700 1.02499 1.18481 1.39611 0.92178 0.89458 0.94767 1.25933 0.99093 0.96516 0.98365 1.70133 1.38852 1.04836 1.42909 0.86359 0.81840 0.77557 0.80712 1.22931 1.21373 1.16452 1.21678 0.91947 0.97157 0.87916 1.24557 1.00841 0.74731 0.99108 0.88861 1.23070 1.02864 0.98634 0.93442 1.23080 1.03430 0.90273 1.03797 1.24056 0.74094 0.90101 0.80170 1.90638 1.55535 1.34018 1.59665 1.86840 1.79771 1.30929 1.29983 0.93770 0.91295 0.94459 0.92535 0.94677 0.92563 0.92505 0.91294 0.88133 0.86074 0.84647 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.89 10.21 71.98 0.73 -5.16 16 2 C 0.14 5.84 6.20 86.38 0.54 6.38 16 3 N -0.61 -27.92 2.05 -702.01 -1.44 -29.36 16 4 C -0.27 -14.60 9.78 84.03 0.82 -13.78 16 5 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 6 C 0.00 -0.02 5.01 84.86 0.43 0.41 16 7 N -0.93 -54.22 13.97 21.65 0.30 -53.91 16 8 Si 0.91 41.89 26.32 68.60 1.81 43.70 16 9 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.24 -10.14 5.91 99.48 0.59 -9.55 16 12 C 0.14 5.37 3.51 86.38 0.30 5.67 16 13 C 0.06 2.12 3.91 31.02 0.12 2.24 16 14 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 15 C -0.14 -3.00 6.69 31.61 0.21 -2.78 16 16 C -0.17 -3.24 6.97 30.74 0.21 -3.02 16 17 C 0.47 14.67 8.62 71.54 0.62 15.29 16 18 O -0.51 -19.08 18.00 21.62 0.39 -18.69 16 19 O -0.36 -12.79 9.30 -49.67 -0.46 -13.25 16 20 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 21 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 22 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.06 2.22 6.92 -2.39 -0.02 2.21 16 24 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 25 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 26 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 27 H 0.07 2.75 4.57 -2.39 -0.01 2.74 16 28 H 0.10 1.88 7.79 -2.39 -0.02 1.86 16 29 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -66.69 259.49 5.57 -61.12 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.99 Total: 5.15 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 3.98 Total: 5.24 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.13 Total: -83.27 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.07 Total: -31.95 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.81 Total: 43.70 kcal Total: -66.69 5.57 -61.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851744311.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.942 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds