Wall clock time and date at job start Sun Mar 29 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.36929 * 119.99803 * 300.00107 * 4 2 1 6 6 H 1.08008 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00035 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99962 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47239 * 120.00531 * 9 7 5 12 12 H 1.48501 * 109.46793 * 240.00112 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 H 1.08996 * 109.48735 * 180.02562 * 13 2 1 15 15 C 1.53095 * 109.48047 * 300.06345 * 13 2 1 16 16 C 1.53176 * 109.16152 * 177.59102 * 15 13 2 17 17 C 1.53181 * 109.03658 * 303.01305 * 16 15 13 18 18 C 1.53088 * 109.16179 * 56.98333 * 17 16 15 19 19 O 1.42904 * 109.41529 * 302.39354 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 0.96999 * 120.00080 * 119.99592 * 4 2 1 27 27 H 0.97000 * 119.99693 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.51997 * 297.48963 * 15 13 2 29 29 H 1.08990 * 109.52654 * 57.68172 * 15 13 2 30 30 H 1.09000 * 109.54479 * 183.15263 * 16 15 13 31 31 H 1.08998 * 109.55118 * 62.88002 * 16 15 13 32 32 H 1.09003 * 109.52327 * 297.08132 * 17 16 15 33 33 H 1.08997 * 109.57812 * 176.92117 * 17 16 15 34 34 H 1.09002 * 109.48194 * 182.41111 * 18 17 16 35 35 H 1.08995 * 109.49321 * 62.38127 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6876 -0.2229 2.4398 6 1 1.0669 0.6555 2.5390 7 6 2.1498 -0.8775 3.5733 8 7 2.9066 -1.9476 3.4525 9 14 1.6991 -0.2389 5.2699 10 1 0.8458 0.9687 5.1337 11 1 0.9560 -1.2884 6.0125 12 1 2.9370 0.1102 6.0122 13 6 2.0400 -0.7213 -1.2492 14 1 3.1300 -0.7218 -1.2492 15 6 1.5285 -2.1642 -1.2502 16 6 1.9930 -2.8614 -2.5326 17 6 1.4926 -2.0666 -3.7427 18 6 2.0054 -0.6274 -3.6455 19 8 1.5638 -0.0478 -2.4162 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 2.5760 -1.4793 1.1072 27 1 3.2293 -2.4053 4.2445 28 1 1.9268 -2.6924 -0.3839 29 1 0.4394 -2.1647 -1.2093 30 1 1.5855 -3.8718 -2.5664 31 1 3.0819 -2.9052 -2.5501 32 1 0.4026 -2.0650 -3.7521 33 1 1.8641 -2.5245 -4.6594 34 1 1.6171 -0.0459 -4.4817 35 1 3.0949 -0.6266 -3.6770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879410011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:57 Heat of formation + Delta-G solvation = -50.323066 kcal Electronic energy + Delta-G solvation = -15294.027797 eV Core-core repulsion = 12905.814038 eV Total energy + Delta-G solvation = -2388.213760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37952 -36.07153 -33.35157 -32.36552 -29.94408 -28.49760 -26.37086 -25.06744 -23.47922 -23.05696 -20.01174 -18.56869 -17.13058 -16.00332 -15.38402 -14.76411 -14.36787 -14.08377 -13.74055 -13.36819 -13.01606 -12.61757 -12.36654 -12.00288 -11.37909 -11.26061 -11.15780 -11.05131 -10.82592 -10.74910 -10.62200 -10.26497 -10.14328 -10.02519 -9.62632 -9.35923 -9.05200 -8.80719 -6.91492 -5.72292 -2.99980 3.46006 3.51833 3.53839 4.08170 4.67219 4.99375 5.03385 5.11681 5.30595 5.48415 5.60572 5.64672 5.70474 5.81054 5.87976 5.94893 6.06082 6.11261 6.19748 6.28664 6.41040 6.49554 6.58646 6.68821 6.79799 6.80929 6.95144 7.14957 7.30232 7.64635 7.79050 8.46580 9.57644 10.14256 10.49814 11.50971 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.008445 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.701885 B = 3314.809635 C = 3610.058396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.205 3.795 3 C -0.147 4.147 4 N -0.718 5.718 5 C -0.224 4.224 6 H 0.072 0.928 7 C -0.017 4.017 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.098 3.902 14 H 0.053 0.947 15 C -0.148 4.148 16 C -0.123 4.123 17 C -0.155 4.155 18 C 0.062 3.938 19 O -0.374 6.374 20 H 0.044 0.956 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.383 0.617 27 H 0.253 0.747 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 0.726 -13.029 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.114 3.886 3 C -0.206 4.206 4 N -0.362 5.362 5 C -0.356 4.356 6 H 0.090 0.910 7 C -0.212 4.212 8 N -0.585 5.585 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.040 3.960 14 H 0.071 0.929 15 C -0.186 4.186 16 C -0.161 4.161 17 C -0.192 4.192 18 C -0.015 4.015 19 O -0.293 6.293 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.246 0.982 -12.876 13.107 hybrid contribution 0.190 -0.294 0.956 1.018 sum -2.055 0.689 -11.920 12.115 Atomic orbital electron populations 1.22201 0.97315 1.00936 1.00146 1.19443 0.92755 0.91275 0.85089 1.22161 1.00374 0.97791 1.00283 1.42430 1.60944 1.32921 0.99873 1.19189 1.24953 1.08321 0.83091 0.90974 1.24706 1.00783 0.98091 0.97641 1.69667 1.39717 1.21018 1.28065 0.86144 0.77464 0.77848 0.84947 1.20608 1.22018 1.22011 1.22212 0.96957 0.91278 0.85582 0.92902 1.22225 1.02265 0.96333 0.97762 1.21617 1.00647 0.98912 0.94883 1.22179 1.01772 0.96792 0.98490 1.22473 0.98122 0.93433 0.87520 1.87899 1.74141 1.54100 1.13115 0.93713 0.92967 0.93271 0.92796 0.93685 0.93628 0.78292 0.93710 0.89888 0.90888 0.91930 0.92179 0.91314 0.91648 0.89542 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 7.95 37.16 0.30 -2.61 16 2 C 0.21 4.24 0.67 -131.82 -0.09 4.15 16 3 C -0.15 -2.93 8.30 37.15 0.31 -2.63 16 4 N -0.72 -17.86 4.86 -47.23 -0.23 -18.09 16 5 C -0.22 -6.16 8.67 -15.06 -0.13 -6.29 16 6 H 0.07 1.95 6.69 -52.48 -0.35 1.60 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 8 N -0.94 -28.12 13.06 55.49 0.72 -27.40 16 9 Si 0.90 22.55 29.55 -169.99 -5.02 17.52 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 C 0.10 1.76 1.95 -26.68 -0.05 1.71 16 14 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.15 -2.50 4.91 -26.59 -0.13 -2.63 16 16 C -0.12 -1.67 6.03 -26.55 -0.16 -1.83 16 17 C -0.15 -1.84 6.14 -26.59 -0.16 -2.01 16 18 C 0.06 0.79 6.84 37.20 0.25 1.05 16 19 O -0.37 -6.20 9.06 -35.23 -0.32 -6.52 16 20 H 0.04 0.81 7.68 -51.93 -0.40 0.41 16 21 H 0.05 1.08 7.27 -51.93 -0.38 0.71 16 22 H 0.05 0.97 6.38 -51.93 -0.33 0.64 16 23 H 0.05 1.12 7.27 -51.93 -0.38 0.75 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.82 7.68 -51.93 -0.40 0.42 16 26 H 0.38 10.04 6.54 -40.82 -0.27 9.78 16 27 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.08 1.57 6.94 -51.93 -0.36 1.21 16 29 H 0.07 1.26 6.31 -51.93 -0.33 0.93 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -29.42 271.01 -6.43 -35.86 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.71 Total: 6.22 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 0.04 Total: -11.67 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.50 Total: -45.49 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.32 Total: -6.52 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.42 -6.43 -35.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879410011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.468 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds