Wall clock time and date at job start Sun Mar 29 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.36929 * 119.99803 * 300.00107 * 4 2 1 6 6 H 1.08008 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00035 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99962 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47239 * 120.00531 * 9 7 5 12 12 H 1.48501 * 109.46793 * 240.00112 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 14 14 H 1.08996 * 109.48735 * 180.02562 * 13 2 1 15 15 C 1.53095 * 109.48047 * 300.06345 * 13 2 1 16 16 C 1.53176 * 109.16152 * 177.59102 * 15 13 2 17 17 C 1.53181 * 109.03658 * 303.01305 * 16 15 13 18 18 C 1.53088 * 109.16179 * 56.98333 * 17 16 15 19 19 O 1.42904 * 109.41529 * 302.39354 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 0.96999 * 120.00080 * 119.99592 * 4 2 1 27 27 H 0.97000 * 119.99693 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.51997 * 297.48963 * 15 13 2 29 29 H 1.08990 * 109.52654 * 57.68172 * 15 13 2 30 30 H 1.09000 * 109.54479 * 183.15263 * 16 15 13 31 31 H 1.08998 * 109.55118 * 62.88002 * 16 15 13 32 32 H 1.09003 * 109.52327 * 297.08132 * 17 16 15 33 33 H 1.08997 * 109.57812 * 176.92117 * 17 16 15 34 34 H 1.09002 * 109.48194 * 182.41111 * 18 17 16 35 35 H 1.08995 * 109.49321 * 62.38127 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6876 -0.2229 2.4398 6 1 1.0669 0.6555 2.5390 7 6 2.1498 -0.8775 3.5733 8 7 2.9066 -1.9476 3.4525 9 14 1.6991 -0.2389 5.2699 10 1 0.8458 0.9687 5.1337 11 1 0.9560 -1.2884 6.0125 12 1 2.9370 0.1102 6.0122 13 6 2.0400 -0.7213 -1.2492 14 1 3.1300 -0.7218 -1.2492 15 6 1.5285 -2.1642 -1.2502 16 6 1.9930 -2.8614 -2.5326 17 6 1.4926 -2.0666 -3.7427 18 6 2.0054 -0.6274 -3.6455 19 8 1.5638 -0.0478 -2.4162 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 2.5760 -1.4793 1.1072 27 1 3.2293 -2.4053 4.2445 28 1 1.9268 -2.6924 -0.3839 29 1 0.4394 -2.1647 -1.2093 30 1 1.5855 -3.8718 -2.5664 31 1 3.0819 -2.9052 -2.5501 32 1 0.4026 -2.0650 -3.7521 33 1 1.8641 -2.5245 -4.6594 34 1 1.6171 -0.0459 -4.4817 35 1 3.0949 -0.6266 -3.6770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879410011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:57 Heat of formation + Delta-G solvation = -68.813562 kcal Electronic energy + Delta-G solvation = -15294.829605 eV Core-core repulsion = 12905.814038 eV Total energy + Delta-G solvation = -2389.015568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71393 -37.69878 -34.54918 -34.32235 -31.42296 -30.29931 -27.99255 -26.60490 -25.17448 -24.37450 -21.20743 -20.20172 -19.14766 -17.38169 -16.78417 -16.41868 -15.77514 -15.50102 -15.22070 -14.89023 -14.73729 -14.19549 -13.60480 -13.47300 -13.23211 -12.87100 -12.72020 -12.65392 -12.50243 -12.34979 -12.03092 -11.88164 -11.73928 -11.53962 -11.32122 -10.95778 -10.87930 -10.24686 -8.97852 -7.89930 -5.16978 1.48205 1.48372 1.58133 2.53841 2.89216 3.43888 3.78257 3.93822 3.95981 4.07377 4.11084 4.26701 4.32791 4.51905 4.59810 4.68940 4.79263 4.91557 4.97544 4.99635 5.08325 5.13103 5.15474 5.17015 5.22982 5.31505 5.40974 5.48504 5.63785 5.68569 6.30906 6.40986 7.38843 8.12793 8.37809 9.34181 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.008445 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.701885 B = 3314.809635 C = 3610.058396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.193 3.807 3 C -0.139 4.139 4 N -0.727 5.727 5 C -0.218 4.218 6 H 0.075 0.925 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.296 1.296 13 C 0.109 3.891 14 H 0.043 0.957 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.148 4.148 18 C 0.052 3.948 19 O -0.385 6.385 20 H 0.065 0.935 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.372 0.628 27 H 0.248 0.752 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 1.295 -14.672 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.104 3.896 3 C -0.198 4.198 4 N -0.369 5.369 5 C -0.350 4.350 6 H 0.093 0.907 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.796 3.204 10 H -0.192 1.192 11 H -0.223 1.223 12 H -0.223 1.223 13 C 0.051 3.949 14 H 0.061 0.939 15 C -0.182 4.182 16 C -0.158 4.158 17 C -0.186 4.186 18 C -0.024 4.024 19 O -0.304 6.304 20 H 0.084 0.916 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.205 0.795 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.885 1.584 -14.557 14.924 hybrid contribution 0.366 -0.437 1.346 1.462 sum -2.519 1.148 -13.211 13.497 Atomic orbital electron populations 1.22079 0.96433 1.00694 1.00368 1.19707 0.93316 0.91616 0.84999 1.22066 0.99828 0.97267 1.00650 1.42584 1.60798 1.32834 1.00646 1.19479 1.23590 1.07695 0.84213 0.90728 1.25453 1.01694 0.98802 1.01083 1.69815 1.41449 1.22478 1.28501 0.85163 0.76985 0.77510 0.80714 1.19247 1.22319 1.22331 1.21872 0.96148 0.91510 0.85389 0.93901 1.22130 1.01637 0.95826 0.98630 1.21617 1.00890 0.99479 0.93856 1.22153 1.01765 0.95944 0.98698 1.22807 0.98833 0.94414 0.86387 1.87855 1.74331 1.54525 1.13707 0.91646 0.94421 0.93768 0.94150 0.94430 0.91411 0.79473 0.94287 0.92786 0.91483 0.90756 0.91935 0.91317 0.88695 0.86878 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 7.95 71.98 0.57 -4.73 16 2 C 0.19 7.90 0.67 3.60 0.00 7.90 16 3 C -0.14 -5.44 8.30 71.98 0.60 -4.84 16 4 N -0.73 -36.65 4.86 -303.35 -1.47 -38.12 16 5 C -0.22 -12.05 8.67 84.04 0.73 -11.32 16 6 H 0.07 4.03 6.69 -2.91 -0.02 4.01 16 7 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 8 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 9 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 13 C 0.11 3.84 1.95 30.63 0.06 3.90 16 14 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.14 -4.81 4.91 30.68 0.15 -4.66 16 16 C -0.12 -3.05 6.03 30.71 0.19 -2.86 16 17 C -0.15 -3.03 6.14 30.68 0.19 -2.84 16 18 C 0.05 1.16 6.84 72.01 0.49 1.66 16 19 O -0.39 -11.88 9.06 -148.98 -1.35 -13.23 16 20 H 0.06 2.24 7.68 -2.39 -0.02 2.22 16 21 H 0.04 1.53 7.27 -2.39 -0.02 1.51 16 22 H 0.04 1.73 6.38 -2.38 -0.02 1.71 16 23 H 0.04 1.65 7.27 -2.39 -0.02 1.63 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 2.32 7.68 -2.39 -0.02 2.30 16 26 H 0.37 20.12 6.54 -92.71 -0.61 19.51 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.05 2.09 6.94 -2.39 -0.02 2.08 16 29 H 0.07 2.28 6.31 -2.39 -0.02 2.26 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -62.49 271.01 3.38 -59.11 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.45 Total: 24.55 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.44 Total: -21.86 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -1.19 Total: -97.39 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.35 Total: -13.23 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -62.49 3.38 -59.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879410011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.708 kcal (2) G-P(sol) polarization free energy of solvation -62.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds