Wall clock time and date at job start Sun Mar 29 2020 22:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47292 * 2 1 4 4 N 1.46502 * 109.47248 * 239.99903 * 2 1 3 5 5 C 1.36938 * 119.99858 * 60.00320 * 4 2 1 6 6 H 1.07997 * 119.99828 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00142 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99752 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47346 * 89.99926 * 9 7 5 11 11 H 1.48503 * 109.46926 * 209.99298 * 9 7 5 12 12 H 1.48495 * 109.47440 * 329.99474 * 9 7 5 13 13 C 1.53002 * 109.47068 * 120.00106 * 2 1 3 14 14 H 1.08998 * 109.48768 * 300.03188 * 13 2 1 15 15 C 1.53091 * 109.48142 * 180.02562 * 13 2 1 16 16 C 1.53176 * 109.21206 * 182.43908 * 15 13 2 17 17 C 1.53174 * 109.03724 * 56.94941 * 16 15 13 18 18 C 1.53084 * 109.16456 * 303.01556 * 17 16 15 19 19 O 1.42906 * 109.41372 * 57.61236 * 18 17 16 20 20 H 1.08993 * 109.47154 * 300.00025 * 1 2 3 21 21 H 1.09001 * 109.46722 * 60.00441 * 1 2 3 22 22 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47298 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.46943 * 299.99940 * 3 2 1 25 25 H 1.09002 * 109.46841 * 59.99918 * 3 2 1 26 26 H 0.97002 * 120.00186 * 240.00133 * 4 2 1 27 27 H 0.97002 * 119.99706 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.52401 * 62.50061 * 15 13 2 29 29 H 1.09004 * 109.52068 * 302.37706 * 15 13 2 30 30 H 1.09004 * 109.53956 * 176.81728 * 16 15 13 31 31 H 1.08997 * 109.54550 * 296.98990 * 16 15 13 32 32 H 1.09007 * 109.52410 * 62.92341 * 17 16 15 33 33 H 1.09000 * 109.52423 * 183.04692 * 17 16 15 34 34 H 1.09004 * 109.48326 * 177.59400 * 18 17 16 35 35 H 1.08997 * 109.48095 * 297.62758 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.6876 -0.2227 -2.4399 6 1 1.0664 0.6551 -2.5390 7 6 2.1499 -0.8774 -3.5732 8 7 2.9066 -1.9476 -3.4525 9 14 1.6981 -0.2396 -5.2699 10 1 2.7215 0.7377 -5.7201 11 1 1.6425 -1.3740 -6.2265 12 1 0.3712 0.4245 -5.2119 13 6 2.0400 -0.7213 1.2492 14 1 1.6764 -0.2080 2.1394 15 6 3.5709 -0.7209 1.2498 16 6 4.0747 -1.4968 2.4706 17 6 3.4938 -2.9137 2.4367 18 6 1.9660 -2.8295 2.3919 19 8 1.5654 -2.0693 1.2500 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 2.5761 -1.4793 -1.1072 27 1 3.2299 -2.4048 -4.2445 28 1 3.9349 0.3056 1.2949 29 1 3.9356 -1.1970 0.3396 30 1 5.1633 -1.5483 2.4461 31 1 3.7540 -0.9916 3.3816 32 1 3.8561 -3.4348 1.5504 33 1 3.8036 -3.4560 3.3300 34 1 1.5483 -3.8341 2.3244 35 1 1.6019 -2.3444 3.2975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879410012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:00 Heat of formation + Delta-G solvation = -69.479055 kcal Electronic energy + Delta-G solvation = -15401.873243 eV Core-core repulsion = 13012.828818 eV Total energy + Delta-G solvation = -2389.044426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63621 -37.60152 -34.47389 -34.36582 -31.38034 -30.35360 -27.96339 -26.28306 -25.30725 -24.29033 -21.16118 -20.22585 -19.02401 -17.40381 -16.95677 -16.24375 -15.69218 -15.57570 -15.12983 -14.90334 -14.33291 -14.11853 -13.69248 -13.44208 -13.19316 -12.94202 -12.75060 -12.53125 -12.49334 -12.17002 -12.08569 -11.97035 -11.80583 -11.47570 -11.24005 -10.91400 -10.84591 -10.17677 -8.88776 -7.84992 -5.10280 1.46866 1.48467 1.56378 2.60705 2.97802 3.48388 3.82026 3.96281 4.00922 4.06213 4.17289 4.30409 4.39534 4.55976 4.63083 4.64561 4.79833 4.86701 4.92173 5.01537 5.08118 5.12552 5.16411 5.20361 5.25362 5.30977 5.49668 5.54741 5.63231 5.74317 6.37163 6.54885 7.43529 8.24181 8.47371 9.39381 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.009543 C = 0.008818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.312508 B = 2933.462156 C = 3174.505164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.187 3.813 3 C -0.146 4.146 4 N -0.722 5.722 5 C -0.215 4.215 6 H 0.075 0.925 7 C -0.084 4.084 8 N -0.974 5.974 9 Si 0.965 3.035 10 H -0.289 1.289 11 H -0.300 1.300 12 H -0.271 1.271 13 C 0.101 3.899 14 H 0.078 0.922 15 C -0.147 4.147 16 C -0.115 4.115 17 C -0.154 4.154 18 C 0.053 3.947 19 O -0.398 6.398 20 H 0.068 0.932 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.373 0.627 27 H 0.246 0.754 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 2.772 14.763 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.098 3.902 3 C -0.205 4.205 4 N -0.363 5.363 5 C -0.348 4.348 6 H 0.092 0.908 7 C -0.275 4.275 8 N -0.626 5.626 9 Si 0.795 3.205 10 H -0.217 1.217 11 H -0.227 1.227 12 H -0.197 1.197 13 C 0.044 3.956 14 H 0.095 0.905 15 C -0.185 4.185 16 C -0.153 4.153 17 C -0.192 4.192 18 C -0.023 4.023 19 O -0.317 6.317 20 H 0.087 0.913 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.206 0.794 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.593 2.808 14.498 14.779 hybrid contribution 0.267 -0.227 -1.274 1.322 sum -0.327 2.581 13.223 13.477 Atomic orbital electron populations 1.22086 0.96981 1.00491 1.00452 1.19993 0.92917 0.91636 0.85698 1.22191 1.00828 0.96144 1.01313 1.42616 1.60413 1.32682 1.00551 1.19525 1.23158 1.07382 0.84717 0.90750 1.25455 1.02130 0.98865 1.01091 1.69846 1.41792 1.22658 1.28278 0.85249 0.77955 0.76624 0.80677 1.21659 1.22744 1.19653 1.22257 0.93220 0.82900 0.97242 0.90472 1.22166 0.96116 1.01466 0.98761 1.21587 1.00807 0.95249 0.97637 1.22170 0.96509 0.97833 1.02660 1.22732 0.94445 0.96470 0.88653 1.88032 1.74641 1.24098 1.44944 0.91300 0.94432 0.94508 0.93187 0.93841 0.90662 0.79405 0.94542 0.90241 0.94051 0.91100 0.89948 0.93516 0.88562 0.88877 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.30 71.98 0.60 -4.82 16 2 C 0.19 7.50 0.62 3.61 0.00 7.50 16 3 C -0.15 -5.13 8.09 71.98 0.58 -4.55 16 4 N -0.72 -37.40 4.72 -303.34 -1.43 -38.83 16 5 C -0.22 -12.17 8.67 84.03 0.73 -11.44 16 6 H 0.07 4.04 6.69 -2.91 -0.02 4.02 16 7 C -0.08 -4.99 5.50 84.86 0.47 -4.53 16 8 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 9 Si 0.96 47.86 29.55 68.60 2.03 49.89 16 10 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 13 C 0.10 3.45 1.87 30.63 0.06 3.51 16 14 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.15 -4.77 4.84 30.68 0.15 -4.62 16 16 C -0.12 -2.84 6.03 30.71 0.19 -2.66 16 17 C -0.15 -3.86 6.14 30.68 0.19 -3.67 16 18 C 0.05 1.44 6.84 72.01 0.49 1.93 16 19 O -0.40 -14.78 9.48 -148.98 -1.41 -16.19 16 20 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 21 H 0.04 1.52 7.27 -2.39 -0.02 1.50 16 22 H 0.04 1.54 7.69 -2.39 -0.02 1.52 16 23 H 0.05 1.78 6.49 -2.39 -0.02 1.76 16 24 H 0.04 1.65 7.27 -2.39 -0.02 1.64 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.37 21.37 6.39 -92.71 -0.59 20.78 16 27 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.08 2.37 6.57 -2.39 -0.02 2.36 16 29 H 0.04 1.70 6.81 -2.38 -0.02 1.68 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -67.26 271.78 3.38 -63.88 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.46 Total: 26.31 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.45 Total: -23.36 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -1.15 Total: -100.54 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.41 Total: -16.19 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -67.26 3.38 -63.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879410012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.599 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds