Wall clock time and date at job start Sun Mar 29 2020 21:53:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08996 * 109.47295 * 2 1
4 4 C 1.50697 * 109.47269 * 239.99507 * 2 1 3
5 5 H 1.08003 * 120.00255 * 239.99959 * 4 2 1
6 6 C 1.37879 * 119.99665 * 60.00001 * 4 2 1
7 7 N 1.31513 * 120.00208 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99842 * 180.02562 * 6 4 2
9 9 H 1.48500 * 109.47500 * 90.00187 * 8 6 4
10 10 H 1.48506 * 109.47377 * 210.00136 * 8 6 4
11 11 H 1.48497 * 109.47465 * 330.00202 * 8 6 4
12 12 C 1.50703 * 109.47080 * 119.99915 * 2 1 3
13 13 O 1.21281 * 120.00371 * 34.83381 * 12 2 1
14 14 N 1.34778 * 119.99753 * 214.83460 * 12 2 1
15 15 C 1.47577 * 134.49301 * 354.80602 * 14 12 2
16 16 C 1.53953 * 86.11923 * 155.35669 * 15 14 12
17 17 C 1.47586 * 134.49105 * 174.80103 * 14 12 2
18 18 H 1.08994 * 113.86958 * 90.32989 * 17 14 12
19 19 C 1.52996 * 113.76856 * 318.94263 * 17 14 12
20 20 O 1.42904 * 109.47435 * 298.99989 * 19 17 14
21 21 H 1.09000 * 109.47075 * 64.61485 * 1 2 3
22 22 H 1.09004 * 109.47529 * 184.61523 * 1 2 3
23 23 H 1.08998 * 109.47182 * 304.61174 * 1 2 3
24 24 H 0.96998 * 119.99820 * 179.97438 * 7 6 4
25 25 H 1.09000 * 113.77153 * 41.05672 * 15 14 12
26 26 H 1.09004 * 113.76702 * 269.65449 * 15 14 12
27 27 H 1.09004 * 113.74090 * 269.26142 * 16 15 14
28 28 H 1.08998 * 113.73932 * 137.94616 * 16 15 14
29 29 H 1.08999 * 109.47561 * 59.00110 * 19 17 14
30 30 H 1.08996 * 109.47469 * 178.99852 * 19 17 14
31 31 H 0.96699 * 114.00328 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2304
5 1 2.6533 -1.5886 -1.1312
6 6 1.6992 -0.2395 -2.4827
7 7 0.9435 0.8301 -2.6034
8 14 2.3213 -1.1206 -4.0078
9 1 1.3427 -2.1619 -4.4118
10 1 2.4866 -0.1417 -5.1123
11 1 3.6292 -1.7586 -3.7121
12 6 2.0323 -0.7104 1.2305
13 8 1.4216 -1.6595 1.6746
14 7 3.1602 -0.2910 1.8375
15 6 4.1800 0.7312 1.5326
16 6 4.4602 0.7528 3.0463
17 6 3.8713 -0.6694 3.0741
18 1 4.6136 -1.4550 2.9332
19 6 2.9446 -0.9299 4.2632
20 8 2.2109 0.2587 4.5648
21 1 -0.3633 0.4406 -0.9284
22 1 -0.3634 -1.0243 0.0827
23 1 -0.3633 0.5837 0.8458
24 1 0.7095 1.1616 -3.4844
25 1 3.7663 1.6639 1.1491
26 1 5.0127 0.3571 0.9370
27 1 3.8652 1.4849 3.5923
28 1 5.5205 0.7936 3.2957
29 1 2.2502 -1.7322 4.0139
30 1 3.5385 -1.2200 5.1300
31 1 1.6015 0.1664 5.3099
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000889158278.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:53:46
Heat of formation + Delta-G solvation = -57.552040 kcal
Electronic energy + Delta-G solvation = -14756.234299 eV
Core-core repulsion = 12231.873973 eV
Total energy + Delta-G solvation = -2524.360326 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.72477 -37.15747 -35.85391 -33.67392 -30.49793 -28.93374 -28.19677 -25.14455
-23.06201 -22.64514 -20.32985 -18.15468 -17.08713 -16.40450 -16.01696 -15.38244
-15.17435 -14.53045 -13.69617 -13.37293 -12.66564 -12.38840 -12.33015 -12.13631
-11.75098 -11.43616 -11.05142 -10.97362 -10.75299 -10.44610 -10.29930 -10.17785
-10.05802 -9.84017 -8.98930 -8.51307 -8.23887 -7.94146 -6.05998 -4.13747
3.29180 3.35068 3.37794 3.55506 3.86167 4.37428 4.42654 4.80092
5.24382 5.25904 5.32521 5.42111 5.59202 5.75387 5.82936 5.95326
6.10295 6.12222 6.58946 6.77527 6.90759 7.08635 7.22671 7.62156
7.78870 7.80464 8.01919 8.27153 8.60785 8.86294 9.33160 9.51345
10.99889
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.043539 B = 0.008961 C = 0.008401
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 642.941508 B = 3123.898745 C = 3332.315920
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.038 3.962
3 H 0.041 0.959
4 C -0.506 4.506
5 H 0.056 0.944
6 C 0.065 3.935
7 N -0.886 5.886
8 Si 0.900 3.100
9 H -0.279 1.279
10 H -0.285 1.285
11 H -0.274 1.274
12 C 0.554 3.446
13 O -0.567 6.567
14 N -0.638 5.638
15 C 0.111 3.889
16 C -0.144 4.144
17 C 0.122 3.878
18 H 0.094 0.906
19 C 0.073 3.927
20 O -0.562 6.562
21 H 0.089 0.911
22 H 0.037 0.963
23 H 0.009 0.991
24 H 0.263 0.737
25 H 0.081 0.919
26 H 0.078 0.922
27 H 0.100 0.900
28 H 0.072 0.928
29 H 0.061 0.939
30 H 0.048 0.952
31 H 0.374 0.626
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.717 0.944 10.624 12.605
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.017 3.983
3 H 0.059 0.941
4 C -0.544 4.544
5 H 0.074 0.926
6 C -0.137 4.137
7 N -0.525 5.525
8 Si 0.727 3.273
9 H -0.205 1.205
10 H -0.211 1.211
11 H -0.199 1.199
12 C 0.348 3.652
13 O -0.446 6.446
14 N -0.375 5.375
15 C -0.013 4.013
16 C -0.181 4.181
17 C 0.018 3.982
18 H 0.112 0.888
19 C -0.005 4.005
20 O -0.367 6.367
21 H 0.108 0.892
22 H 0.056 0.944
23 H 0.028 0.972
24 H 0.073 0.927
25 H 0.099 0.901
26 H 0.096 0.904
27 H 0.119 0.881
28 H 0.091 0.909
29 H 0.080 0.920
30 H 0.066 0.934
31 H 0.220 0.780
Dipole moment (debyes) X Y Z Total
from point charges 6.450 0.714 10.087 11.994
hybrid contribution 0.077 -0.794 -0.435 0.908
sum 6.528 -0.080 9.652 11.653
Atomic orbital electron populations
1.21633 0.96175 0.99688 1.00877 1.18789 0.94451 0.96204 0.88839
0.94099 1.20769 1.31817 1.12437 0.89389 0.92605 1.24914 0.94909
0.94950 0.98942 1.69887 1.36273 1.22663 1.23652 0.86471 0.79293
0.79361 0.82175 1.20497 1.21051 1.19886 1.21684 0.77358 0.82537
0.83587 1.90491 1.58252 1.29153 1.66660 1.50198 1.23399 1.39668
1.24264 1.22940 0.90244 0.92626 0.95472 1.23540 1.00524 0.97048
0.97029 1.22776 0.92478 0.97603 0.85337 0.88825 1.22173 0.94610
0.87900 0.95845 1.86496 1.59143 1.35618 1.55423 0.89210 0.94360
0.97196 0.92734 0.90059 0.90382 0.88135 0.90909 0.92027 0.93352
0.78041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.35 8.77 37.15 0.33 -3.03 16
2 C 0.04 1.03 2.49 -92.93 -0.23 0.80 16
3 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16
4 C -0.51 -14.43 8.55 -34.44 -0.29 -14.72 16
5 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16
6 C 0.06 1.81 5.29 -17.82 -0.09 1.71 16
7 N -0.89 -25.26 11.30 55.43 0.63 -24.63 16
8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16
9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16
10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
12 C 0.55 13.97 6.86 -10.98 -0.08 13.90 16
13 O -0.57 -15.53 15.81 5.56 0.09 -15.45 16
14 N -0.64 -13.06 3.47 -171.16 -0.59 -13.65 16
15 C 0.11 1.82 8.42 -2.97 -0.03 1.79 16
16 C -0.14 -1.93 7.70 -25.80 -0.20 -2.13 16
17 C 0.12 1.92 4.77 -66.86 -0.32 1.60 16
18 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
19 C 0.07 1.07 7.05 37.16 0.26 1.33 16
20 O -0.56 -8.39 12.16 -35.23 -0.43 -8.82 16
21 H 0.09 2.51 5.96 -51.93 -0.31 2.20 16
22 H 0.04 1.03 7.69 -51.93 -0.40 0.63 16
23 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16
24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
25 H 0.08 1.36 7.80 -51.93 -0.41 0.96 16
26 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16
27 H 0.10 1.43 6.94 -51.93 -0.36 1.07 16
28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
29 H 0.06 1.06 7.25 -51.93 -0.38 0.69 16
30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.37 3.83 9.12 45.56 0.42 4.25 16
LS Contribution 262.52 15.07 3.96 3.96
Total: -1.00 -33.57 262.52 -5.50 -39.08
By element:
Atomic # 1 Polarization: 5.25 SS G_CDS: -3.48 Total: 1.77 kcal
Atomic # 6 Polarization: 1.91 SS G_CDS: -0.65 Total: 1.26 kcal
Atomic # 7 Polarization: -38.32 SS G_CDS: 0.03 Total: -38.29 kcal
Atomic # 8 Polarization: -23.92 SS G_CDS: -0.34 Total: -24.26 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -33.57 -5.50 -39.08 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000889158278.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.475 kcal
(2) G-P(sol) polarization free energy of solvation -33.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.049 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds