Wall clock time and date at job start Sun Mar 29 2020 21:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47295 * 2 1 4 4 C 1.50697 * 109.47269 * 239.99507 * 2 1 3 5 5 H 1.08003 * 120.00255 * 239.99959 * 4 2 1 6 6 C 1.37879 * 119.99665 * 60.00001 * 4 2 1 7 7 N 1.31513 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99842 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47500 * 90.00187 * 8 6 4 10 10 H 1.48506 * 109.47377 * 210.00136 * 8 6 4 11 11 H 1.48497 * 109.47465 * 330.00202 * 8 6 4 12 12 C 1.50703 * 109.47080 * 119.99915 * 2 1 3 13 13 O 1.21281 * 120.00371 * 34.83381 * 12 2 1 14 14 N 1.34778 * 119.99753 * 214.83460 * 12 2 1 15 15 C 1.47577 * 134.49301 * 354.80602 * 14 12 2 16 16 C 1.53953 * 86.11923 * 155.35669 * 15 14 12 17 17 C 1.47586 * 134.49105 * 174.80103 * 14 12 2 18 18 H 1.08994 * 113.86958 * 90.32989 * 17 14 12 19 19 C 1.52996 * 113.76856 * 318.94263 * 17 14 12 20 20 O 1.42904 * 109.47435 * 298.99989 * 19 17 14 21 21 H 1.09000 * 109.47075 * 64.61485 * 1 2 3 22 22 H 1.09004 * 109.47529 * 184.61523 * 1 2 3 23 23 H 1.08998 * 109.47182 * 304.61174 * 1 2 3 24 24 H 0.96998 * 119.99820 * 179.97438 * 7 6 4 25 25 H 1.09000 * 113.77153 * 41.05672 * 15 14 12 26 26 H 1.09004 * 113.76702 * 269.65449 * 15 14 12 27 27 H 1.09004 * 113.74090 * 269.26142 * 16 15 14 28 28 H 1.08998 * 113.73932 * 137.94616 * 16 15 14 29 29 H 1.08999 * 109.47561 * 59.00110 * 19 17 14 30 30 H 1.08996 * 109.47469 * 178.99852 * 19 17 14 31 31 H 0.96699 * 114.00328 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1206 -4.0078 9 1 1.3427 -2.1619 -4.4118 10 1 2.4866 -0.1417 -5.1123 11 1 3.6292 -1.7586 -3.7121 12 6 2.0323 -0.7104 1.2305 13 8 1.4216 -1.6595 1.6746 14 7 3.1602 -0.2910 1.8375 15 6 4.1800 0.7312 1.5326 16 6 4.4602 0.7528 3.0463 17 6 3.8713 -0.6694 3.0741 18 1 4.6136 -1.4550 2.9332 19 6 2.9446 -0.9299 4.2632 20 8 2.2109 0.2587 4.5648 21 1 -0.3633 0.4406 -0.9284 22 1 -0.3634 -1.0243 0.0827 23 1 -0.3633 0.5837 0.8458 24 1 0.7095 1.1616 -3.4844 25 1 3.7663 1.6639 1.1491 26 1 5.0127 0.3571 0.9370 27 1 3.8652 1.4849 3.5923 28 1 5.5205 0.7936 3.2957 29 1 2.2502 -1.7322 4.0139 30 1 3.5385 -1.2200 5.1300 31 1 1.6015 0.1664 5.3099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889158278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:46 Heat of formation + Delta-G solvation = -57.552040 kcal Electronic energy + Delta-G solvation = -14756.234299 eV Core-core repulsion = 12231.873973 eV Total energy + Delta-G solvation = -2524.360326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.72477 -37.15747 -35.85391 -33.67392 -30.49793 -28.93374 -28.19677 -25.14455 -23.06201 -22.64514 -20.32985 -18.15468 -17.08713 -16.40450 -16.01696 -15.38244 -15.17435 -14.53045 -13.69617 -13.37293 -12.66564 -12.38840 -12.33015 -12.13631 -11.75098 -11.43616 -11.05142 -10.97362 -10.75299 -10.44610 -10.29930 -10.17785 -10.05802 -9.84017 -8.98930 -8.51307 -8.23887 -7.94146 -6.05998 -4.13747 3.29180 3.35068 3.37794 3.55506 3.86167 4.37428 4.42654 4.80092 5.24382 5.25904 5.32521 5.42111 5.59202 5.75387 5.82936 5.95326 6.10295 6.12222 6.58946 6.77527 6.90759 7.08635 7.22671 7.62156 7.78870 7.80464 8.01919 8.27153 8.60785 8.86294 9.33160 9.51345 10.99889 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043539 B = 0.008961 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.941508 B = 3123.898745 C = 3332.315920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.038 3.962 3 H 0.041 0.959 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.554 3.446 13 O -0.567 6.567 14 N -0.638 5.638 15 C 0.111 3.889 16 C -0.144 4.144 17 C 0.122 3.878 18 H 0.094 0.906 19 C 0.073 3.927 20 O -0.562 6.562 21 H 0.089 0.911 22 H 0.037 0.963 23 H 0.009 0.991 24 H 0.263 0.737 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 0.944 10.624 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.017 3.983 3 H 0.059 0.941 4 C -0.544 4.544 5 H 0.074 0.926 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.348 3.652 13 O -0.446 6.446 14 N -0.375 5.375 15 C -0.013 4.013 16 C -0.181 4.181 17 C 0.018 3.982 18 H 0.112 0.888 19 C -0.005 4.005 20 O -0.367 6.367 21 H 0.108 0.892 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.450 0.714 10.087 11.994 hybrid contribution 0.077 -0.794 -0.435 0.908 sum 6.528 -0.080 9.652 11.653 Atomic orbital electron populations 1.21633 0.96175 0.99688 1.00877 1.18789 0.94451 0.96204 0.88839 0.94099 1.20769 1.31817 1.12437 0.89389 0.92605 1.24914 0.94909 0.94950 0.98942 1.69887 1.36273 1.22663 1.23652 0.86471 0.79293 0.79361 0.82175 1.20497 1.21051 1.19886 1.21684 0.77358 0.82537 0.83587 1.90491 1.58252 1.29153 1.66660 1.50198 1.23399 1.39668 1.24264 1.22940 0.90244 0.92626 0.95472 1.23540 1.00524 0.97048 0.97029 1.22776 0.92478 0.97603 0.85337 0.88825 1.22173 0.94610 0.87900 0.95845 1.86496 1.59143 1.35618 1.55423 0.89210 0.94360 0.97196 0.92734 0.90059 0.90382 0.88135 0.90909 0.92027 0.93352 0.78041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.77 37.15 0.33 -3.03 16 2 C 0.04 1.03 2.49 -92.93 -0.23 0.80 16 3 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 4 C -0.51 -14.43 8.55 -34.44 -0.29 -14.72 16 5 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 6 C 0.06 1.81 5.29 -17.82 -0.09 1.71 16 7 N -0.89 -25.26 11.30 55.43 0.63 -24.63 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.55 13.97 6.86 -10.98 -0.08 13.90 16 13 O -0.57 -15.53 15.81 5.56 0.09 -15.45 16 14 N -0.64 -13.06 3.47 -171.16 -0.59 -13.65 16 15 C 0.11 1.82 8.42 -2.97 -0.03 1.79 16 16 C -0.14 -1.93 7.70 -25.80 -0.20 -2.13 16 17 C 0.12 1.92 4.77 -66.86 -0.32 1.60 16 18 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.07 1.07 7.05 37.16 0.26 1.33 16 20 O -0.56 -8.39 12.16 -35.23 -0.43 -8.82 16 21 H 0.09 2.51 5.96 -51.93 -0.31 2.20 16 22 H 0.04 1.03 7.69 -51.93 -0.40 0.63 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.08 1.36 7.80 -51.93 -0.41 0.96 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.10 1.43 6.94 -51.93 -0.36 1.07 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.06 7.25 -51.93 -0.38 0.69 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.37 3.83 9.12 45.56 0.42 4.25 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -33.57 262.52 -5.50 -39.08 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.48 Total: 1.77 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.65 Total: 1.26 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.03 Total: -38.29 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.34 Total: -24.26 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.57 -5.50 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889158278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.475 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds