Wall clock time and date at job start Sun Mar 29 2020 21:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47295 * 2 1 4 4 C 1.50697 * 109.47269 * 239.99507 * 2 1 3 5 5 H 1.08003 * 120.00255 * 239.99959 * 4 2 1 6 6 C 1.37879 * 119.99665 * 60.00001 * 4 2 1 7 7 N 1.31513 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99842 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47500 * 90.00187 * 8 6 4 10 10 H 1.48506 * 109.47377 * 210.00136 * 8 6 4 11 11 H 1.48497 * 109.47465 * 330.00202 * 8 6 4 12 12 C 1.50703 * 109.47080 * 119.99915 * 2 1 3 13 13 O 1.21281 * 120.00371 * 34.83381 * 12 2 1 14 14 N 1.34778 * 119.99753 * 214.83460 * 12 2 1 15 15 C 1.47577 * 134.49301 * 354.80602 * 14 12 2 16 16 C 1.53953 * 86.11923 * 155.35669 * 15 14 12 17 17 C 1.47586 * 134.49105 * 174.80103 * 14 12 2 18 18 H 1.08994 * 113.86958 * 90.32989 * 17 14 12 19 19 C 1.52996 * 113.76856 * 318.94263 * 17 14 12 20 20 O 1.42904 * 109.47435 * 298.99989 * 19 17 14 21 21 H 1.09000 * 109.47075 * 64.61485 * 1 2 3 22 22 H 1.09004 * 109.47529 * 184.61523 * 1 2 3 23 23 H 1.08998 * 109.47182 * 304.61174 * 1 2 3 24 24 H 0.96998 * 119.99820 * 179.97438 * 7 6 4 25 25 H 1.09000 * 113.77153 * 41.05672 * 15 14 12 26 26 H 1.09004 * 113.76702 * 269.65449 * 15 14 12 27 27 H 1.09004 * 113.74090 * 269.26142 * 16 15 14 28 28 H 1.08998 * 113.73932 * 137.94616 * 16 15 14 29 29 H 1.08999 * 109.47561 * 59.00110 * 19 17 14 30 30 H 1.08996 * 109.47469 * 178.99852 * 19 17 14 31 31 H 0.96699 * 114.00328 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1206 -4.0078 9 1 1.3427 -2.1619 -4.4118 10 1 2.4866 -0.1417 -5.1123 11 1 3.6292 -1.7586 -3.7121 12 6 2.0323 -0.7104 1.2305 13 8 1.4216 -1.6595 1.6746 14 7 3.1602 -0.2910 1.8375 15 6 4.1800 0.7312 1.5326 16 6 4.4602 0.7528 3.0463 17 6 3.8713 -0.6694 3.0741 18 1 4.6136 -1.4550 2.9332 19 6 2.9446 -0.9299 4.2632 20 8 2.2109 0.2587 4.5648 21 1 -0.3633 0.4406 -0.9284 22 1 -0.3634 -1.0243 0.0827 23 1 -0.3633 0.5837 0.8458 24 1 0.7095 1.1616 -3.4844 25 1 3.7663 1.6639 1.1491 26 1 5.0127 0.3571 0.9370 27 1 3.8652 1.4849 3.5923 28 1 5.5205 0.7936 3.2957 29 1 2.2502 -1.7322 4.0139 30 1 3.5385 -1.2200 5.1300 31 1 1.6015 0.1664 5.3099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889158278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:46 Heat of formation + Delta-G solvation = -83.241761 kcal Electronic energy + Delta-G solvation = -14757.348289 eV Core-core repulsion = 12231.873973 eV Total energy + Delta-G solvation = -2525.474316 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22559 -38.87820 -37.06467 -35.79656 -32.56846 -30.51047 -29.45838 -27.33362 -24.73956 -24.03590 -21.94559 -19.63712 -18.62078 -18.34210 -17.67303 -16.98943 -16.62024 -16.22215 -15.28173 -15.19469 -14.25534 -14.10985 -13.89735 -13.55795 -13.37010 -13.06632 -12.91050 -12.72191 -12.55260 -12.27994 -12.24910 -12.10394 -11.43933 -11.14441 -11.04007 -10.59863 -10.16102 -9.51765 -8.19623 -6.36224 1.39423 1.41500 1.51392 1.92111 2.10945 2.42297 3.08081 3.30683 3.63084 3.97126 4.10085 4.24131 4.43041 4.44632 4.59064 4.67310 4.75506 4.82068 4.92974 5.00926 5.01537 5.26159 5.41844 5.50062 5.63593 5.82911 6.12610 6.66324 6.87408 6.90853 7.30793 7.48999 8.85994 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043539 B = 0.008961 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.941508 B = 3123.898745 C = 3332.315920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.034 3.966 3 H 0.028 0.972 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.965 3.035 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.268 1.268 12 C 0.546 3.454 13 O -0.603 6.603 14 N -0.649 5.649 15 C 0.098 3.902 16 C -0.113 4.113 17 C 0.110 3.890 18 H 0.117 0.883 19 C 0.075 3.925 20 O -0.582 6.582 21 H 0.075 0.925 22 H 0.023 0.977 23 H 0.021 0.979 24 H 0.268 0.732 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 1.052 11.184 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.013 3.987 3 H 0.046 0.954 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.546 5.546 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.193 1.193 12 C 0.339 3.661 13 O -0.486 6.486 14 N -0.384 5.384 15 C -0.024 4.024 16 C -0.151 4.151 17 C 0.007 3.993 18 H 0.135 0.865 19 C -0.003 4.003 20 O -0.389 6.389 21 H 0.093 0.907 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.137 0.863 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.451 0.857 10.686 13.650 hybrid contribution -0.511 -0.770 -0.553 1.077 sum 7.940 0.086 10.133 12.874 Atomic orbital electron populations 1.21477 0.96678 0.98662 1.00510 1.18703 0.94271 0.95626 0.90068 0.95352 1.20889 1.32575 1.12508 0.90687 0.93934 1.25696 0.94801 0.95565 1.01694 1.69977 1.36515 1.23476 1.24680 0.85458 0.78785 0.78357 0.78472 1.20352 1.19663 1.19300 1.21212 0.79144 0.82273 0.83440 1.90452 1.59988 1.30523 1.67597 1.50337 1.22571 1.39934 1.25590 1.23300 0.89415 0.91281 0.98401 1.23373 1.02984 0.94863 0.93856 1.23317 0.92544 0.99952 0.83443 0.86520 1.22177 0.94258 0.86783 0.97122 1.86440 1.59930 1.35806 1.56763 0.90676 0.95826 0.96001 0.92257 0.91140 0.88665 0.88779 0.86260 0.95387 0.88793 0.75898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.34 8.77 71.98 0.63 -5.71 16 2 C 0.03 1.90 2.49 -12.29 -0.03 1.87 16 3 H 0.03 1.61 7.50 -2.39 -0.02 1.59 16 4 C -0.53 -30.70 8.55 25.60 0.22 -30.48 16 5 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 6 C 0.02 1.26 5.29 84.66 0.45 1.71 16 7 N -0.91 -52.09 11.30 21.45 0.24 -51.84 16 8 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.55 28.08 6.86 87.66 0.60 28.68 16 13 O -0.60 -33.98 15.81 -3.03 -0.05 -34.02 16 14 N -0.65 -26.18 3.47 -813.82 -2.82 -29.00 16 15 C 0.10 3.07 8.42 86.48 0.73 3.79 16 16 C -0.11 -2.64 7.70 31.26 0.24 -2.40 16 17 C 0.11 3.18 4.77 45.09 0.22 3.40 16 18 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 19 C 0.07 2.04 7.05 71.98 0.51 2.55 16 20 O -0.58 -16.39 12.16 -148.98 -1.81 -18.20 16 21 H 0.07 4.31 5.96 -2.39 -0.01 4.30 16 22 H 0.02 1.30 7.69 -2.39 -0.02 1.29 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.07 2.33 7.80 -2.39 -0.02 2.31 16 26 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.09 2.38 6.94 -2.38 -0.02 2.37 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.03 0.96 7.25 -2.39 -0.02 0.94 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.39 7.44 9.12 -74.06 -0.68 6.76 16 Total: -1.00 -73.70 262.52 1.60 -72.10 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.45 Total: 11.61 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 3.56 Total: 3.41 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.58 Total: -80.84 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.86 Total: -52.23 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -73.70 1.60 -72.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889158278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.142 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds