Wall clock time and date at job start Sun Mar 29 2020 21:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47306 * 2 1 4 4 C 1.50701 * 109.47088 * 120.00596 * 2 1 3 5 5 H 1.07998 * 120.00203 * 119.99820 * 4 2 1 6 6 C 1.37880 * 119.99372 * 299.99557 * 4 2 1 7 7 N 1.31505 * 120.00449 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47525 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47508 * 120.00144 * 8 6 4 11 11 H 1.48504 * 109.47248 * 239.99891 * 8 6 4 12 12 C 1.50710 * 109.47024 * 240.00111 * 2 1 3 13 13 O 1.21286 * 119.99805 * 240.00290 * 12 2 1 14 14 N 1.34774 * 119.99746 * 60.00014 * 12 2 1 15 15 C 1.47584 * 134.49605 * 0.02562 * 14 12 2 16 16 C 1.53941 * 86.11797 * 155.35394 * 15 14 12 17 17 C 1.47582 * 134.48985 * 179.97438 * 14 12 2 18 18 H 1.08993 * 113.87032 * 90.32516 * 17 14 12 19 19 C 1.53006 * 113.76951 * 318.94279 * 17 14 12 20 20 O 1.42899 * 109.47105 * 299.00071 * 19 17 14 21 21 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47373 * 300.00024 * 1 2 3 23 23 H 1.09000 * 109.47176 * 59.99711 * 1 2 3 24 24 H 0.97000 * 120.00479 * 180.02562 * 7 6 4 25 25 H 1.08996 * 113.76651 * 41.04929 * 15 14 12 26 26 H 1.09000 * 113.86592 * 269.67247 * 15 14 12 27 27 H 1.09000 * 113.74175 * 269.25913 * 16 15 14 28 28 H 1.08995 * 113.83935 * 137.96426 * 16 15 14 29 29 H 1.09003 * 109.46846 * 59.00158 * 19 17 14 30 30 H 1.08997 * 109.46798 * 178.99771 * 19 17 14 31 31 H 0.96703 * 113.99729 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3212 -1.1205 4.0078 9 1 3.1463 -2.2873 3.6037 10 1 3.1465 -0.1877 4.8165 11 1 1.1659 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2306 13 8 2.7295 -1.6966 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 0.9051 0.8845 -2.9535 16 6 1.7569 0.7884 -4.2322 17 6 2.0092 -0.6770 -3.8345 18 1 1.2830 -1.3760 -4.2491 19 6 3.4566 -1.1300 -4.0365 20 8 4.3403 -0.0457 -3.7443 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7087 1.1612 3.4844 25 1 1.0550 1.8078 -2.3941 26 1 -0.1474 0.6467 -3.1077 27 1 2.6527 1.4090 -4.2104 28 1 1.1841 0.9012 -5.1526 29 1 3.6725 -1.9646 -3.3694 30 1 3.5976 -1.4453 -5.0703 31 1 5.2768 -0.2619 -3.8511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889158279.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:49 Heat of formation + Delta-G solvation = -54.561111 kcal Electronic energy + Delta-G solvation = -14759.097180 eV Core-core repulsion = 12234.866551 eV Total energy + Delta-G solvation = -2524.230630 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.79507 -37.10424 -35.84449 -33.64713 -30.75588 -28.69612 -28.22603 -25.09151 -22.94483 -22.82260 -20.48562 -18.30208 -17.04461 -16.20402 -15.72584 -15.41095 -15.24069 -14.49564 -13.73729 -13.44112 -12.66865 -12.56275 -12.29980 -12.15848 -12.00824 -11.25808 -11.11652 -10.96195 -10.65642 -10.61009 -10.23680 -10.17771 -9.89307 -9.84323 -8.88225 -8.46141 -8.21144 -7.96595 -5.97416 -4.00060 3.35379 3.42007 3.46266 3.54649 3.84663 4.37709 4.51005 4.75380 5.23430 5.26689 5.35532 5.40588 5.54829 5.67973 5.80042 5.85770 6.01191 6.10325 6.52342 6.65561 6.78620 6.96566 7.05200 7.58376 7.81400 7.83206 8.08655 8.29679 8.60772 9.09029 9.36291 9.64936 11.10364 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045416 B = 0.008843 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.373237 B = 3165.435484 C = 3527.815268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.035 3.965 3 H 0.050 0.950 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.546 3.454 13 O -0.549 6.549 14 N -0.642 5.642 15 C 0.106 3.894 16 C -0.143 4.143 17 C 0.122 3.878 18 H 0.094 0.906 19 C 0.073 3.927 20 O -0.562 6.562 21 H 0.028 0.972 22 H 0.092 0.908 23 H 0.014 0.986 24 H 0.259 0.741 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 0.694 -13.620 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.340 3.660 13 O -0.425 6.425 14 N -0.380 5.380 15 C -0.017 4.017 16 C -0.181 4.181 17 C 0.018 3.982 18 H 0.112 0.888 19 C -0.005 4.005 20 O -0.366 6.366 21 H 0.047 0.953 22 H 0.110 0.890 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.203 0.482 -13.055 13.065 hybrid contribution 0.667 -0.757 0.713 1.236 sum 0.871 -0.275 -12.342 12.376 Atomic orbital electron populations 1.21746 0.96656 0.99586 1.00970 1.18805 0.94061 0.96762 0.88947 0.93247 1.21207 1.30683 1.12671 0.89031 0.90841 1.24953 0.95207 0.95117 0.99070 1.69884 1.37308 1.23206 1.23312 0.86408 0.78589 0.79784 0.82524 1.19599 1.21062 1.21074 1.21724 0.78071 0.83499 0.82747 1.90493 1.38863 1.27298 1.85870 1.50283 1.52733 1.31154 1.03877 1.22963 0.95255 0.90919 0.92568 1.23524 1.00999 0.96328 0.97224 1.22763 0.94668 0.97035 0.83700 0.88822 1.22171 0.90005 0.89969 0.98383 1.86487 1.19448 1.38062 1.92644 0.95313 0.88966 0.96665 0.93089 0.90155 0.90570 0.88083 0.90938 0.91903 0.93479 0.77978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.85 37.15 0.33 -2.87 16 2 C 0.04 0.94 2.47 -92.92 -0.23 0.71 16 3 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -14.77 8.37 -34.44 -0.29 -15.06 16 5 H 0.07 2.30 6.75 -52.49 -0.35 1.95 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -26.01 11.32 55.43 0.63 -25.38 16 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 C 0.55 13.59 7.28 -10.98 -0.08 13.51 16 13 O -0.55 -15.21 14.95 5.55 0.08 -15.13 16 14 N -0.64 -12.54 3.43 -171.21 -0.59 -13.13 16 15 C 0.11 1.61 6.88 -2.98 -0.02 1.59 16 16 C -0.14 -1.83 7.70 -25.82 -0.20 -2.03 16 17 C 0.12 1.85 4.78 -66.87 -0.32 1.53 16 18 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.07 1.07 7.01 37.16 0.26 1.33 16 20 O -0.56 -8.53 12.16 -35.23 -0.43 -8.96 16 21 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 23 H 0.01 0.30 6.14 -51.93 -0.32 -0.02 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 27 H 0.10 1.41 6.93 -51.93 -0.36 1.05 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.09 7.17 -51.93 -0.37 0.72 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.37 4.00 9.12 45.56 0.42 4.42 16 LS Contribution 258.66 15.07 3.90 3.90 Total: -1.00 -34.29 258.66 -5.46 -39.75 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.39 Total: 1.29 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.64 Total: 0.25 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.04 Total: -38.51 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.35 Total: -24.09 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.29 -5.46 -39.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889158279.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.809 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds