Wall clock time and date at job start Sun Mar 29 2020 21:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47306 * 2 1 4 4 C 1.50701 * 109.47088 * 120.00596 * 2 1 3 5 5 H 1.07998 * 120.00203 * 119.99820 * 4 2 1 6 6 C 1.37880 * 119.99372 * 299.99557 * 4 2 1 7 7 N 1.31505 * 120.00449 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47525 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47508 * 120.00144 * 8 6 4 11 11 H 1.48504 * 109.47248 * 239.99891 * 8 6 4 12 12 C 1.50710 * 109.47024 * 240.00111 * 2 1 3 13 13 O 1.21286 * 119.99805 * 240.00290 * 12 2 1 14 14 N 1.34774 * 119.99746 * 60.00014 * 12 2 1 15 15 C 1.47584 * 134.49605 * 0.02562 * 14 12 2 16 16 C 1.53941 * 86.11797 * 155.35394 * 15 14 12 17 17 C 1.47582 * 134.48985 * 179.97438 * 14 12 2 18 18 H 1.08993 * 113.87032 * 90.32516 * 17 14 12 19 19 C 1.53006 * 113.76951 * 318.94279 * 17 14 12 20 20 O 1.42899 * 109.47105 * 299.00071 * 19 17 14 21 21 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47373 * 300.00024 * 1 2 3 23 23 H 1.09000 * 109.47176 * 59.99711 * 1 2 3 24 24 H 0.97000 * 120.00479 * 180.02562 * 7 6 4 25 25 H 1.08996 * 113.76651 * 41.04929 * 15 14 12 26 26 H 1.09000 * 113.86592 * 269.67247 * 15 14 12 27 27 H 1.09000 * 113.74175 * 269.25913 * 16 15 14 28 28 H 1.08995 * 113.83935 * 137.96426 * 16 15 14 29 29 H 1.09003 * 109.46846 * 59.00158 * 19 17 14 30 30 H 1.08997 * 109.46798 * 178.99771 * 19 17 14 31 31 H 0.96703 * 113.99729 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3212 -1.1205 4.0078 9 1 3.1463 -2.2873 3.6037 10 1 3.1465 -0.1877 4.8165 11 1 1.1659 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2306 13 8 2.7295 -1.6966 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 0.9051 0.8845 -2.9535 16 6 1.7569 0.7884 -4.2322 17 6 2.0092 -0.6770 -3.8345 18 1 1.2830 -1.3760 -4.2491 19 6 3.4566 -1.1300 -4.0365 20 8 4.3403 -0.0457 -3.7443 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7087 1.1612 3.4844 25 1 1.0550 1.8078 -2.3941 26 1 -0.1474 0.6467 -3.1077 27 1 2.6527 1.4090 -4.2104 28 1 1.1841 0.9012 -5.1526 29 1 3.6725 -1.9646 -3.3694 30 1 3.5976 -1.4453 -5.0703 31 1 5.2768 -0.2619 -3.8511 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889158279.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:48 Heat of formation + Delta-G solvation = -81.431220 kcal Electronic energy + Delta-G solvation = -14760.262356 eV Core-core repulsion = 12234.866551 eV Total energy + Delta-G solvation = -2525.395805 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.24584 -38.79888 -37.06735 -35.77295 -32.78927 -30.25147 -29.44963 -27.24756 -24.65010 -24.11413 -22.06880 -19.70829 -18.37525 -18.30027 -17.43570 -17.05175 -16.63553 -16.21652 -15.38762 -15.15543 -14.45030 -13.99818 -13.90267 -13.59692 -13.38941 -12.98561 -12.91534 -12.66267 -12.55916 -12.28233 -12.13343 -12.04319 -11.41969 -11.05253 -11.03761 -10.58227 -10.10773 -9.49343 -8.17554 -6.28712 1.36918 1.37678 1.52164 1.95887 2.07258 2.43073 3.10942 3.31786 3.64271 3.97511 4.12357 4.22704 4.42212 4.47197 4.60443 4.67405 4.73936 4.81075 4.94390 4.97191 5.03012 5.26901 5.43873 5.54030 5.70000 5.94773 6.21567 6.75777 6.86980 6.94005 7.38485 7.54921 8.88782 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045416 B = 0.008843 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.373237 B = 3165.435484 C = 3527.815268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.031 3.969 3 H 0.027 0.973 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.017 3.983 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.270 1.270 12 C 0.539 3.461 13 O -0.594 6.594 14 N -0.650 5.650 15 C 0.096 3.904 16 C -0.116 4.116 17 C 0.110 3.890 18 H 0.122 0.878 19 C 0.072 3.928 20 O -0.583 6.583 21 H 0.019 0.981 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.266 0.734 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.026 0.974 30 H 0.093 0.907 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 1.143 -15.246 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.010 3.990 3 H 0.045 0.955 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.784 3.216 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.196 1.196 12 C 0.332 3.668 13 O -0.475 6.475 14 N -0.386 5.386 15 C -0.026 4.026 16 C -0.154 4.154 17 C 0.008 3.992 18 H 0.140 0.860 19 C -0.006 4.006 20 O -0.390 6.390 21 H 0.038 0.962 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.123 0.877 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.044 0.956 30 H 0.110 0.890 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.614 0.976 -14.736 14.781 hybrid contribution 0.916 -0.839 1.125 1.675 sum 0.302 0.137 -13.611 13.615 Atomic orbital electron populations 1.21529 0.95006 0.99119 1.01650 1.18705 0.95391 0.95274 0.89674 0.95487 1.21312 1.31591 1.12653 0.91224 0.93635 1.25654 0.95170 0.95799 1.01531 1.69961 1.37228 1.23630 1.24309 0.85492 0.78435 0.78526 0.79116 1.20523 1.19769 1.19556 1.21235 0.78239 0.83061 0.84299 1.90453 1.40933 1.29104 1.86983 1.50353 1.52235 1.32028 1.04012 1.23388 0.96837 0.89140 0.93261 1.23362 1.00405 0.93750 0.97836 1.23326 0.95766 0.99531 0.80594 0.86003 1.22215 0.89772 0.88605 0.99988 1.86436 1.21006 1.38578 1.92989 0.96150 0.91127 0.92973 0.92516 0.90926 0.87683 0.89237 0.86128 0.95585 0.88959 0.76043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.85 71.98 0.64 -4.98 16 2 C 0.03 1.68 2.47 -12.28 -0.03 1.65 16 3 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.53 -32.61 8.37 25.60 0.21 -32.40 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -53.24 11.32 21.45 0.24 -53.00 16 8 Si 0.96 46.59 29.54 68.60 2.03 48.62 16 9 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.54 27.44 7.28 87.66 0.64 28.08 16 13 O -0.59 -34.31 14.95 -3.05 -0.05 -34.35 16 14 N -0.65 -24.72 3.43 -813.97 -2.79 -27.51 16 15 C 0.10 2.62 6.88 86.48 0.59 3.22 16 16 C -0.12 -2.50 7.70 31.24 0.24 -2.26 16 17 C 0.11 3.03 4.78 45.08 0.22 3.25 16 18 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 19 C 0.07 1.99 7.01 71.98 0.50 2.50 16 20 O -0.58 -17.05 12.16 -148.98 -1.81 -18.86 16 21 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 23 H 0.05 2.08 6.14 -2.39 -0.01 2.06 16 24 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.11 2.33 7.97 -2.39 -0.02 2.31 16 27 H 0.09 2.21 6.93 -2.39 -0.02 2.19 16 28 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.03 0.91 7.17 -2.39 -0.02 0.89 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.39 8.04 9.12 -74.06 -0.68 7.36 16 Total: -1.00 -77.21 258.66 1.54 -75.67 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.46 Total: 8.93 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 3.46 Total: 0.51 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.55 Total: -80.51 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -1.86 Total: -53.21 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.21 1.54 -75.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889158279.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.766 kcal (2) G-P(sol) polarization free energy of solvation -77.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds