Wall clock time and date at job start Sun Mar 29 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 110.00825 * 2 1 4 4 C 1.54324 * 109.88401 * 121.11224 * 2 1 3 5 5 C 1.55136 * 103.17504 * 141.77916 * 4 2 1 6 6 C 1.54908 * 101.65333 * 324.25813 * 5 4 2 7 7 N 1.47845 * 104.79645 * 37.07003 * 6 5 4 8 8 C 1.46905 * 111.00128 * 213.63678 * 7 6 5 9 9 C 1.53000 * 109.46813 * 290.12438 * 8 7 6 10 10 H 1.08996 * 109.47091 * 60.00034 * 9 8 7 11 11 O 1.42901 * 109.47387 * 300.00094 * 9 8 7 12 12 C 1.50696 * 109.46682 * 180.02562 * 9 8 7 13 13 H 1.08001 * 120.00224 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00004 * 180.02562 * 12 9 8 15 15 N 1.31522 * 120.00186 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00226 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.46935 * 59.99814 * 16 14 12 18 18 H 1.48496 * 109.47242 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46893 * 299.99674 * 16 14 12 20 20 H 1.08994 * 109.47347 * 300.34371 * 1 2 3 21 21 H 1.09005 * 109.46292 * 60.34195 * 1 2 3 22 22 H 1.08995 * 109.46613 * 180.33973 * 1 2 3 23 23 H 1.09004 * 109.46823 * 179.65551 * 3 2 1 24 24 H 1.08996 * 109.47401 * 299.65777 * 3 2 1 25 25 H 1.09005 * 109.47546 * 59.66087 * 3 2 1 26 26 H 1.09002 * 110.70820 * 23.30832 * 4 2 1 27 27 H 1.09005 * 110.70311 * 260.24827 * 4 2 1 28 28 H 1.09000 * 110.99407 * 82.35125 * 5 4 2 29 29 H 1.08999 * 110.99513 * 206.16450 * 5 4 2 30 30 H 1.08998 * 110.37381 * 155.89874 * 6 5 4 31 31 H 1.08997 * 110.37377 * 278.24251 * 6 5 4 32 32 H 1.08995 * 109.46719 * 50.12213 * 8 7 6 33 33 H 1.09000 * 109.46548 * 170.12688 * 8 7 6 34 34 H 0.96702 * 113.99441 * 299.99761 * 11 9 8 35 35 H 0.96993 * 120.00087 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0550 -0.7499 1.2425 5 6 3.2912 -1.5133 0.6987 6 6 2.8245 -1.8870 -0.7303 7 7 2.0368 -0.7222 -1.1870 8 6 0.9316 -1.1429 -2.0585 9 6 1.4942 -1.6411 -3.3912 10 1 2.1578 -2.4870 -3.2119 11 8 2.2248 -0.5882 -4.0232 12 6 0.3604 -2.0722 -4.2853 13 1 -0.6596 -1.9978 -3.9379 14 6 0.6250 -2.5615 -5.5468 15 7 1.8670 -2.6516 -5.9701 16 14 -0.7805 -3.0965 -6.6550 17 1 -1.6843 -1.9440 -6.8996 18 1 -0.2344 -3.5811 -7.9481 19 1 -1.5399 -4.1905 -5.9980 20 1 -0.3634 0.5191 0.8868 21 1 -0.3632 0.5086 -0.8931 22 1 -0.3632 -1.0276 0.0061 23 1 3.1435 1.4273 0.0062 24 1 1.7001 1.9530 -0.8930 25 1 1.6901 1.9567 0.8869 26 1 1.3055 -1.4471 1.6170 27 1 2.3484 -0.0464 2.0217 28 1 4.1671 -0.8654 0.6664 29 1 3.4900 -2.4066 1.2907 30 1 3.6844 -2.0426 -1.3818 31 1 2.2005 -2.7803 -0.7043 32 1 0.3744 -1.9461 -1.5763 33 1 0.2680 -0.2970 -2.2377 34 1 1.6957 0.1986 -4.2132 35 1 2.0531 -2.9955 -6.8577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929506566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:04 Heat of formation + Delta-G solvation = -51.291471 kcal Electronic energy + Delta-G solvation = -15192.183144 eV Core-core repulsion = 12803.927391 eV Total energy + Delta-G solvation = -2388.255753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.36885 -35.48244 -32.08455 -32.03779 -31.56026 -27.61860 -27.03220 -24.91664 -24.09564 -21.45695 -20.03318 -18.28034 -16.77727 -15.50313 -15.08709 -14.55587 -14.52941 -14.06989 -13.47478 -13.17117 -12.76106 -12.72297 -12.10566 -11.85737 -11.77706 -11.35774 -11.17010 -10.95384 -10.85457 -10.75995 -10.56417 -10.42940 -10.33030 -10.07406 -9.98037 -8.87996 -8.51395 -8.01402 -7.51178 -5.95186 -4.13555 3.30960 3.36293 3.37808 4.35730 4.51626 4.89179 4.99886 5.17119 5.32068 5.50484 5.53223 5.66398 5.79895 5.88819 5.94319 5.99042 6.07747 6.17332 6.19172 6.28869 6.30998 6.40474 6.48704 6.53619 6.60945 6.76835 6.93988 7.62503 7.77072 7.84128 7.95779 8.27549 8.90747 9.52511 9.69854 11.08863 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047430 B = 0.008049 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.202401 B = 3477.953946 C = 3613.872066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.088 3.912 3 C -0.122 4.122 4 C -0.132 4.132 5 C -0.129 4.129 6 C 0.047 3.953 7 N -0.508 5.508 8 C 0.025 3.975 9 C 0.238 3.762 10 H 0.051 0.949 11 O -0.554 6.554 12 C -0.574 4.574 13 H 0.053 0.947 14 C 0.080 3.920 15 N -0.859 5.859 16 Si 0.888 3.112 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.341 0.659 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 4.159 12.316 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.002 4.002 3 C -0.180 4.180 4 C -0.171 4.171 5 C -0.167 4.167 6 C -0.080 4.080 7 N -0.232 5.232 8 C -0.103 4.103 9 C 0.180 3.820 10 H 0.069 0.931 11 O -0.355 6.355 12 C -0.613 4.613 13 H 0.071 0.929 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.715 3.285 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.184 0.816 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.349 3.986 11.919 12.573 hybrid contribution -1.897 -0.612 -0.245 2.008 sum -1.548 3.374 11.674 12.250 Atomic orbital electron populations 1.22358 0.95830 1.01896 1.01754 1.21857 0.93163 0.95257 0.89875 1.21688 1.01142 0.94545 1.00622 1.22865 0.97658 0.99031 0.97498 1.22696 0.97878 0.99726 0.96444 1.22995 0.98191 0.92464 0.94392 1.63741 1.22757 1.22549 1.14184 1.23316 0.92148 0.98449 0.96345 1.19290 0.91026 0.86527 0.85197 0.93145 1.86558 1.40222 1.26606 1.82138 1.21642 0.93323 1.45661 1.00624 0.92908 1.25024 0.95228 0.94484 0.97898 1.70077 1.17991 1.43142 1.18224 0.86761 0.82666 0.79062 0.79995 1.20169 1.21189 1.20278 0.93050 0.91555 0.92584 0.92543 0.92452 0.93521 0.91912 0.91431 0.91046 0.91554 0.90253 0.94065 0.95545 0.91482 0.81634 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 7.16 37.16 0.27 -2.05 16 2 C 0.09 1.34 1.17 -130.36 -0.15 1.19 16 3 C -0.12 -1.70 8.71 37.15 0.32 -1.38 16 4 C -0.13 -1.74 6.00 -24.91 -0.15 -1.89 16 5 C -0.13 -1.78 7.08 -24.59 -0.17 -1.96 16 6 C 0.05 0.84 5.82 -2.30 -0.01 0.82 16 7 N -0.51 -9.53 4.67 -215.41 -1.00 -10.54 16 8 C 0.03 0.53 3.31 -3.82 -0.01 0.52 16 9 C 0.24 6.18 2.83 -27.89 -0.08 6.10 16 10 H 0.05 1.45 7.52 -51.93 -0.39 1.06 16 11 O -0.55 -14.87 12.60 -35.23 -0.44 -15.32 16 12 C -0.57 -16.04 8.76 -34.44 -0.30 -16.34 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 14 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 15 N -0.86 -25.86 12.84 55.43 0.71 -25.15 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.07 1.01 6.40 -51.93 -0.33 0.68 16 22 H 0.06 0.85 6.98 -51.93 -0.36 0.48 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 27 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.04 0.75 7.61 -51.93 -0.40 0.35 16 32 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 33 H 0.07 1.39 6.04 -51.93 -0.31 1.08 16 34 H 0.34 8.27 9.04 45.56 0.41 8.68 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 276.35 15.07 4.16 4.16 Total: -1.00 -30.45 276.35 -7.03 -37.49 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.05 Total: 5.75 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.39 Total: -12.82 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.29 Total: -35.68 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.44 Total: -15.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.45 -7.03 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929506566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.802 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds