Wall clock time and date at job start Sun Mar 29 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 110.00825 * 2 1 4 4 C 1.54324 * 109.88401 * 121.11224 * 2 1 3 5 5 C 1.55136 * 103.17504 * 141.77916 * 4 2 1 6 6 C 1.54908 * 101.65333 * 324.25813 * 5 4 2 7 7 N 1.47845 * 104.79645 * 37.07003 * 6 5 4 8 8 C 1.46905 * 111.00128 * 213.63678 * 7 6 5 9 9 C 1.53000 * 109.46813 * 290.12438 * 8 7 6 10 10 H 1.08996 * 109.47091 * 60.00034 * 9 8 7 11 11 O 1.42901 * 109.47387 * 300.00094 * 9 8 7 12 12 C 1.50696 * 109.46682 * 180.02562 * 9 8 7 13 13 H 1.08001 * 120.00224 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00004 * 180.02562 * 12 9 8 15 15 N 1.31522 * 120.00186 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00226 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.46935 * 59.99814 * 16 14 12 18 18 H 1.48496 * 109.47242 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46893 * 299.99674 * 16 14 12 20 20 H 1.08994 * 109.47347 * 300.34371 * 1 2 3 21 21 H 1.09005 * 109.46292 * 60.34195 * 1 2 3 22 22 H 1.08995 * 109.46613 * 180.33973 * 1 2 3 23 23 H 1.09004 * 109.46823 * 179.65551 * 3 2 1 24 24 H 1.08996 * 109.47401 * 299.65777 * 3 2 1 25 25 H 1.09005 * 109.47546 * 59.66087 * 3 2 1 26 26 H 1.09002 * 110.70820 * 23.30832 * 4 2 1 27 27 H 1.09005 * 110.70311 * 260.24827 * 4 2 1 28 28 H 1.09000 * 110.99407 * 82.35125 * 5 4 2 29 29 H 1.08999 * 110.99513 * 206.16450 * 5 4 2 30 30 H 1.08998 * 110.37381 * 155.89874 * 6 5 4 31 31 H 1.08997 * 110.37377 * 278.24251 * 6 5 4 32 32 H 1.08995 * 109.46719 * 50.12213 * 8 7 6 33 33 H 1.09000 * 109.46548 * 170.12688 * 8 7 6 34 34 H 0.96702 * 113.99441 * 299.99761 * 11 9 8 35 35 H 0.96993 * 120.00087 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0550 -0.7499 1.2425 5 6 3.2912 -1.5133 0.6987 6 6 2.8245 -1.8870 -0.7303 7 7 2.0368 -0.7222 -1.1870 8 6 0.9316 -1.1429 -2.0585 9 6 1.4942 -1.6411 -3.3912 10 1 2.1578 -2.4870 -3.2119 11 8 2.2248 -0.5882 -4.0232 12 6 0.3604 -2.0722 -4.2853 13 1 -0.6596 -1.9978 -3.9379 14 6 0.6250 -2.5615 -5.5468 15 7 1.8670 -2.6516 -5.9701 16 14 -0.7805 -3.0965 -6.6550 17 1 -1.6843 -1.9440 -6.8996 18 1 -0.2344 -3.5811 -7.9481 19 1 -1.5399 -4.1905 -5.9980 20 1 -0.3634 0.5191 0.8868 21 1 -0.3632 0.5086 -0.8931 22 1 -0.3632 -1.0276 0.0061 23 1 3.1435 1.4273 0.0062 24 1 1.7001 1.9530 -0.8930 25 1 1.6901 1.9567 0.8869 26 1 1.3055 -1.4471 1.6170 27 1 2.3484 -0.0464 2.0217 28 1 4.1671 -0.8654 0.6664 29 1 3.4900 -2.4066 1.2907 30 1 3.6844 -2.0426 -1.3818 31 1 2.2005 -2.7803 -0.7043 32 1 0.3744 -1.9461 -1.5763 33 1 0.2680 -0.2970 -2.2377 34 1 1.6957 0.1986 -4.2132 35 1 2.0531 -2.9955 -6.8577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929506566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:04 Heat of formation + Delta-G solvation = -73.810882 kcal Electronic energy + Delta-G solvation = -15193.159659 eV Core-core repulsion = 12803.927391 eV Total energy + Delta-G solvation = -2389.232268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71011 -37.48623 -34.23394 -33.31380 -33.09701 -29.47723 -28.25172 -26.30979 -25.82800 -23.04163 -21.59010 -19.74380 -18.76150 -16.91326 -16.66398 -16.44821 -16.13412 -15.86533 -15.08908 -14.57232 -14.36497 -14.04564 -13.56946 -13.40661 -13.07388 -12.93032 -12.77148 -12.75190 -12.44906 -12.27605 -12.01002 -11.89235 -11.77286 -11.47096 -11.37529 -10.93660 -10.68845 -10.06236 -9.02219 -8.12957 -6.39721 1.39089 1.41294 1.49516 2.37884 3.09240 3.13676 3.70963 3.81087 4.02135 4.29042 4.32742 4.37973 4.42580 4.53805 4.64749 4.71097 4.77110 4.90889 4.93800 4.99264 5.00625 5.09595 5.12753 5.21714 5.26595 5.36281 5.57629 5.59719 5.77376 6.04846 6.28194 6.38845 6.74868 7.34511 7.62845 8.91400 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047430 B = 0.008049 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.202401 B = 3477.953946 C = 3613.872066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.079 3.921 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.119 4.119 6 C 0.041 3.959 7 N -0.526 5.526 8 C 0.049 3.951 9 C 0.238 3.762 10 H 0.012 0.988 11 O -0.570 6.570 12 C -0.590 4.590 13 H 0.058 0.942 14 C 0.024 3.976 15 N -0.900 5.900 16 Si 0.961 3.039 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.269 1.269 20 H 0.080 0.920 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.022 0.978 33 H 0.072 0.928 34 H 0.351 0.649 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 4.843 13.885 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.010 4.010 3 C -0.176 4.176 4 C -0.162 4.162 5 C -0.157 4.157 6 C -0.087 4.087 7 N -0.250 5.250 8 C -0.080 4.080 9 C 0.180 3.820 10 H 0.030 0.970 11 O -0.373 6.373 12 C -0.628 4.628 13 H 0.077 0.923 14 C -0.178 4.178 15 N -0.537 5.537 16 Si 0.785 3.215 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.194 1.194 20 H 0.099 0.901 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.194 0.806 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.832 4.682 13.510 14.322 hybrid contribution -1.482 -0.802 -0.713 1.830 sum -2.315 3.880 12.797 13.571 Atomic orbital electron populations 1.22306 0.95127 1.01468 1.02566 1.22077 0.93881 0.95737 0.89290 1.21669 1.00835 0.93663 1.01408 1.22852 0.97127 0.99306 0.96960 1.22660 0.98404 1.00896 0.93694 1.22980 0.97029 0.91978 0.96674 1.63631 1.22165 1.22964 1.16242 1.22856 0.92496 0.98180 0.94428 1.19160 0.89733 0.85569 0.87580 0.97034 1.86499 1.40977 1.27185 1.82665 1.22040 0.94005 1.45480 1.01256 0.92350 1.25934 0.97879 0.94390 0.99591 1.70229 1.20417 1.44363 1.18719 0.85600 0.79219 0.78969 0.77705 1.19050 1.20905 1.19360 0.90118 0.92837 0.93625 0.93002 0.93913 0.90464 0.91278 0.88665 0.90489 0.89417 0.92992 0.95269 0.95985 0.90979 0.80552 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 7.16 71.98 0.52 -3.68 16 2 C 0.08 2.25 1.17 3.79 0.00 2.25 16 3 C -0.12 -3.00 8.71 71.98 0.63 -2.37 16 4 C -0.12 -2.87 6.00 31.78 0.19 -2.68 16 5 C -0.12 -3.03 7.08 31.98 0.23 -2.81 16 6 C 0.04 1.48 5.82 86.77 0.50 1.99 16 7 N -0.53 -19.71 4.67 -835.42 -3.90 -23.61 16 8 C 0.05 2.09 3.31 86.30 0.29 2.37 16 9 C 0.24 12.76 2.83 29.85 0.08 12.85 16 10 H 0.01 0.72 7.52 -2.39 -0.02 0.70 16 11 O -0.57 -31.60 12.60 -148.98 -1.88 -33.47 16 12 C -0.59 -33.42 8.76 25.60 0.22 -33.20 16 13 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 14 C 0.02 1.40 5.40 84.65 0.46 1.86 16 15 N -0.90 -55.48 12.84 21.45 0.28 -55.21 16 16 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.05 1.55 6.40 -2.38 -0.02 1.54 16 22 H 0.04 1.30 6.98 -2.39 -0.02 1.28 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 27 H 0.09 1.73 7.83 -2.38 -0.02 1.71 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.09 7.61 -2.39 -0.02 1.07 16 32 H 0.02 0.95 6.86 -2.39 -0.02 0.94 16 33 H 0.07 2.99 6.04 -2.39 -0.01 2.98 16 34 H 0.35 17.43 9.04 -74.06 -0.67 16.76 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.31 276.35 0.03 -66.28 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.39 Total: 23.26 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.12 Total: -23.43 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -3.62 Total: -78.82 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.88 Total: -33.47 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.31 0.03 -66.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929506566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.531 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds