Wall clock time and date at job start Sun Mar 29 2020 22:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 112.90634 * 2 1 4 4 C 1.53785 * 113.61423 * 228.75160 * 2 1 3 5 5 C 1.53787 * 87.07792 * 220.01918 * 4 2 1 6 6 C 1.53775 * 87.08043 * 25.43317 * 5 4 2 7 7 H 1.08998 * 113.69343 * 89.12909 * 6 5 4 8 8 N 1.46904 * 113.61407 * 220.01958 * 6 5 4 9 9 C 1.46899 * 111.00029 * 252.49998 * 8 6 5 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 12 12 O 1.42905 * 109.47264 * 299.99921 * 10 9 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 10 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 10 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.08998 * 109.47160 * 288.74848 * 1 2 3 22 22 H 1.09004 * 109.47205 * 48.74976 * 1 2 3 23 23 H 1.09004 * 109.47018 * 168.74651 * 1 2 3 24 24 H 1.09002 * 109.47210 * 191.24953 * 3 2 1 25 25 H 1.09004 * 109.47190 * 311.25242 * 3 2 1 26 26 H 1.08999 * 109.47126 * 71.25332 * 3 2 1 27 27 H 1.08999 * 113.61111 * 334.56543 * 4 2 1 28 28 H 1.09002 * 113.61497 * 105.38834 * 4 2 1 29 29 H 1.08997 * 113.61163 * 270.88559 * 5 4 2 30 30 H 1.08999 * 113.61234 * 139.98255 * 5 4 2 31 31 H 1.00908 * 110.99583 * 16.44910 * 8 6 5 32 32 H 1.09002 * 109.47043 * 299.99792 * 9 8 6 33 33 H 1.09001 * 109.47354 * 59.99854 * 9 8 6 34 34 H 0.96696 * 114.00036 * 299.99911 * 12 10 9 35 35 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 3.1924 -1.3136 0.0000 6 6 2.1460 -0.9291 1.0593 7 1 1.4939 -1.7528 1.3499 8 7 2.7106 -0.2145 2.2119 9 6 2.7357 -1.0736 3.4032 10 6 3.3294 -0.2967 4.5799 11 1 2.7183 0.5835 4.7796 12 8 4.6609 0.1109 4.2585 13 6 3.3546 -1.1778 5.8022 14 1 2.9846 -2.1908 5.7453 15 6 3.8510 -0.6911 6.9929 16 7 3.8734 -1.4602 8.0595 17 14 4.4930 1.0604 7.0908 18 1 3.3840 1.9739 7.4663 19 1 5.5661 1.1379 8.1143 20 1 5.0392 1.4620 5.7696 21 1 -0.3633 0.3303 0.9731 22 1 -0.3634 0.6776 -0.7727 23 1 -0.3633 -1.0079 -0.2006 24 1 3.1954 1.3517 -0.2005 25 1 1.6428 2.0078 -0.7726 26 1 1.9627 1.8726 0.9731 27 1 1.4945 -1.7535 -1.3490 28 1 2.5638 -0.3988 -1.9153 29 1 4.0710 -0.6686 0.0000 30 1 3.4444 -2.3740 -0.0001 31 1 3.6320 0.1395 2.0019 32 1 1.7202 -1.3848 3.6482 33 1 3.3473 -1.9536 3.2038 34 1 5.2617 -0.6226 4.0687 35 1 4.2223 -1.1176 8.8972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930630773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:45 Heat of formation + Delta-G solvation = -41.537551 kcal Electronic energy + Delta-G solvation = -14744.603544 eV Core-core repulsion = 12356.770753 eV Total energy + Delta-G solvation = -2387.832791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75213 -36.49944 -33.20883 -32.22816 -30.39202 -28.36201 -27.27677 -24.97363 -22.83224 -22.26900 -20.48574 -18.12654 -17.25921 -15.49128 -15.17961 -14.82659 -14.49396 -14.22223 -13.90164 -13.32461 -13.11514 -12.79525 -12.50846 -12.09594 -11.86497 -11.61484 -11.57732 -11.40965 -11.07010 -10.80919 -10.59301 -10.41164 -10.17079 -10.00464 -9.71424 -9.00927 -8.60723 -8.25292 -7.77110 -6.11004 -4.22138 3.42277 3.50984 3.77806 4.54824 4.56576 4.63291 4.77113 4.87873 5.15287 5.23390 5.38763 5.58746 5.67370 5.73243 5.81158 5.83968 5.91265 5.95929 6.02107 6.08287 6.15063 6.20763 6.26232 6.36024 6.52806 6.63229 6.74230 7.34671 7.53073 7.71449 7.98362 8.30521 8.84697 9.03372 9.54064 10.99678 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051015 B = 0.007010 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.727915 B = 3993.377505 C = 4097.829033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C -0.119 4.119 4 C -0.134 4.134 5 C -0.170 4.170 6 C 0.076 3.924 7 H 0.090 0.910 8 N -0.675 5.675 9 C 0.045 3.955 10 C 0.195 3.805 11 H 0.062 0.938 12 O -0.582 6.582 13 C -0.564 4.564 14 H 0.070 0.930 15 C 0.082 3.918 16 N -0.895 5.895 17 Si 0.874 3.126 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.217 1.217 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.344 0.656 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.352 0.648 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 2.399 -16.602 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.079 4.079 3 C -0.176 4.176 4 C -0.172 4.172 5 C -0.209 4.209 6 C -0.035 4.035 7 H 0.108 0.892 8 N -0.306 5.306 9 C -0.084 4.084 10 C 0.138 3.862 11 H 0.080 0.920 12 O -0.387 6.387 13 C -0.602 4.602 14 H 0.088 0.912 15 C -0.122 4.122 16 N -0.532 5.532 17 Si 0.701 3.299 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.139 1.139 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.198 0.802 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.577 3.283 -16.138 16.852 hybrid contribution 1.143 -0.575 0.029 1.280 sum -2.434 2.708 -16.109 16.515 Atomic orbital electron populations 1.21695 0.94581 1.00960 1.01770 1.21999 0.94986 0.95452 0.95465 1.21421 0.99613 0.94333 1.02253 1.22929 0.98365 0.99329 0.96588 1.23610 0.97916 1.01153 0.98252 1.23097 0.96106 0.95203 0.89115 0.89190 1.60377 1.29261 1.37499 1.03416 1.22619 1.00799 0.94217 0.90753 1.19825 0.80602 0.95019 0.90758 0.92011 1.86696 1.22941 1.37261 1.91815 1.21516 1.44204 1.00816 0.93669 0.91154 1.25010 0.93778 0.98350 0.95047 1.69964 1.45204 1.36977 1.01027 0.86981 0.78733 0.84395 0.79829 1.21413 1.22409 1.13931 0.92155 0.93173 0.93128 0.93159 0.93580 0.90890 0.90550 0.91737 0.90118 0.91990 0.83641 0.91373 0.95987 0.80240 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.08 -0.95 1.37 -153.69 -0.21 -1.16 16 3 C -0.12 -1.45 8.44 37.16 0.31 -1.14 16 4 C -0.13 -1.46 7.20 -25.91 -0.19 -1.65 16 5 C -0.17 -2.07 7.35 -25.92 -0.19 -2.26 16 6 C 0.08 1.07 3.63 -66.90 -0.24 0.82 16 7 H 0.09 1.31 7.82 -51.93 -0.41 0.90 16 8 N -0.68 -11.28 5.54 -105.87 -0.59 -11.87 16 9 C 0.05 0.89 5.17 -3.83 -0.02 0.87 16 10 C 0.20 4.57 2.58 -27.89 -0.07 4.50 16 11 H 0.06 1.54 7.57 -51.93 -0.39 1.14 16 12 O -0.58 -12.94 9.48 -35.23 -0.33 -13.27 16 13 C -0.56 -15.78 9.34 -34.44 -0.32 -16.10 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 16 N -0.89 -27.54 13.96 55.43 0.77 -26.77 16 17 Si 0.87 22.12 26.99 -169.99 -4.59 17.53 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.22 -5.35 5.30 56.52 0.30 -5.05 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.53 7.94 -51.93 -0.41 0.12 16 24 H 0.05 0.60 7.34 -51.93 -0.38 0.22 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.02 7.77 -51.93 -0.40 0.61 16 27 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 28 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.08 0.98 7.33 -51.93 -0.38 0.60 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.34 5.71 7.51 -39.29 -0.30 5.41 16 32 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.35 6.95 9.04 45.56 0.41 7.36 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 278.76 15.07 4.20 4.20 Total: -1.00 -30.02 278.76 -6.51 -36.52 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.29 Total: 8.66 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.69 Total: -15.00 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.19 Total: -38.64 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.33 Total: -13.27 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.59 Total: 17.53 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.02 -6.51 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930630773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.014 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds