Wall clock time and date at job start Sun Mar 29 2020 22:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 112.90634 * 2 1 4 4 C 1.53785 * 113.61423 * 228.75160 * 2 1 3 5 5 C 1.53787 * 87.07792 * 220.01918 * 4 2 1 6 6 C 1.53775 * 87.08043 * 25.43317 * 5 4 2 7 7 H 1.08998 * 113.69343 * 89.12909 * 6 5 4 8 8 N 1.46904 * 113.61407 * 220.01958 * 6 5 4 9 9 C 1.46899 * 111.00029 * 252.49998 * 8 6 5 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 12 12 O 1.42905 * 109.47264 * 299.99921 * 10 9 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 10 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 10 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.08998 * 109.47160 * 288.74848 * 1 2 3 22 22 H 1.09004 * 109.47205 * 48.74976 * 1 2 3 23 23 H 1.09004 * 109.47018 * 168.74651 * 1 2 3 24 24 H 1.09002 * 109.47210 * 191.24953 * 3 2 1 25 25 H 1.09004 * 109.47190 * 311.25242 * 3 2 1 26 26 H 1.08999 * 109.47126 * 71.25332 * 3 2 1 27 27 H 1.08999 * 113.61111 * 334.56543 * 4 2 1 28 28 H 1.09002 * 113.61497 * 105.38834 * 4 2 1 29 29 H 1.08997 * 113.61163 * 270.88559 * 5 4 2 30 30 H 1.08999 * 113.61234 * 139.98255 * 5 4 2 31 31 H 1.00908 * 110.99583 * 16.44910 * 8 6 5 32 32 H 1.09002 * 109.47043 * 299.99792 * 9 8 6 33 33 H 1.09001 * 109.47354 * 59.99854 * 9 8 6 34 34 H 0.96696 * 114.00036 * 299.99911 * 12 10 9 35 35 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 3.1924 -1.3136 0.0000 6 6 2.1460 -0.9291 1.0593 7 1 1.4939 -1.7528 1.3499 8 7 2.7106 -0.2145 2.2119 9 6 2.7357 -1.0736 3.4032 10 6 3.3294 -0.2967 4.5799 11 1 2.7183 0.5835 4.7796 12 8 4.6609 0.1109 4.2585 13 6 3.3546 -1.1778 5.8022 14 1 2.9846 -2.1908 5.7453 15 6 3.8510 -0.6911 6.9929 16 7 3.8734 -1.4602 8.0595 17 14 4.4930 1.0604 7.0908 18 1 3.3840 1.9739 7.4663 19 1 5.5661 1.1379 8.1143 20 1 5.0392 1.4620 5.7696 21 1 -0.3633 0.3303 0.9731 22 1 -0.3634 0.6776 -0.7727 23 1 -0.3633 -1.0079 -0.2006 24 1 3.1954 1.3517 -0.2005 25 1 1.6428 2.0078 -0.7726 26 1 1.9627 1.8726 0.9731 27 1 1.4945 -1.7535 -1.3490 28 1 2.5638 -0.3988 -1.9153 29 1 4.0710 -0.6686 0.0000 30 1 3.4444 -2.3740 -0.0001 31 1 3.6320 0.1395 2.0019 32 1 1.7202 -1.3848 3.6482 33 1 3.3473 -1.9536 3.2038 34 1 5.2617 -0.6226 4.0687 35 1 4.2223 -1.1176 8.8972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930630773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:44 Heat of formation + Delta-G solvation = -63.318794 kcal Electronic energy + Delta-G solvation = -14745.548050 eV Core-core repulsion = 12356.770753 eV Total energy + Delta-G solvation = -2388.777297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79263 -38.28256 -34.70003 -34.39578 -31.38862 -30.16548 -28.22449 -26.64641 -24.13297 -23.27953 -22.30273 -19.38400 -19.15837 -16.90177 -16.80256 -16.31274 -16.15880 -15.64715 -15.16547 -14.88976 -14.57406 -14.07941 -13.83808 -13.54823 -13.16512 -13.02910 -12.83116 -12.71736 -12.52124 -12.31970 -12.17832 -11.94945 -11.46543 -11.12701 -10.98901 -10.97129 -10.78932 -10.11137 -9.09917 -8.36135 -6.51054 1.41111 1.45542 1.75821 2.44154 3.01757 3.32310 3.65638 3.79011 3.91085 4.03899 4.09356 4.41889 4.47026 4.53608 4.63028 4.70865 4.81362 4.92358 4.94909 5.03516 5.07617 5.09252 5.20377 5.27186 5.38468 5.44304 5.52888 5.59951 5.68881 6.06918 6.27593 6.57710 6.68114 7.17862 7.33327 8.78154 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051015 B = 0.007010 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.727915 B = 3993.377505 C = 4097.829033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.121 4.121 5 C -0.166 4.166 6 C 0.062 3.938 7 H 0.082 0.918 8 N -0.674 5.674 9 C 0.061 3.939 10 C 0.206 3.794 11 H 0.052 0.948 12 O -0.579 6.579 13 C -0.567 4.567 14 H 0.034 0.966 15 C 0.027 3.973 16 N -0.941 5.941 17 Si 0.942 3.058 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.203 1.203 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.346 0.654 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.366 0.634 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 3.541 -18.805 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 C -0.174 4.174 4 C -0.159 4.159 5 C -0.205 4.205 6 C -0.049 4.049 7 H 0.100 0.900 8 N -0.305 5.305 9 C -0.068 4.068 10 C 0.148 3.852 11 H 0.070 0.930 12 O -0.386 6.386 13 C -0.605 4.605 14 H 0.053 0.947 15 C -0.173 4.173 16 N -0.580 5.580 17 Si 0.767 3.233 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.125 1.125 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.213 0.787 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.253 4.416 -18.371 19.173 hybrid contribution 1.010 -1.008 0.685 1.582 sum -2.243 3.408 -17.686 18.151 Atomic orbital electron populations 1.21691 0.94066 1.01800 1.01358 1.22028 0.95458 0.95410 0.94986 1.21393 1.00026 0.94338 1.01625 1.22878 0.97570 0.99162 0.96270 1.23567 0.97819 1.01350 0.97741 1.23276 0.97112 0.95742 0.88727 0.89996 1.60337 1.29475 1.37272 1.03425 1.22248 0.99681 0.93944 0.90950 1.19546 0.81330 0.93931 0.90430 0.93025 1.86612 1.22505 1.37825 1.91653 1.21856 1.43060 0.99968 0.95655 0.94726 1.25891 0.94247 1.02385 0.94731 1.70087 1.47016 1.39058 1.01833 0.85935 0.77926 0.79279 0.80195 1.21420 1.22420 1.12476 0.93822 0.91679 0.92368 0.92861 0.91970 0.92956 0.89499 0.90294 0.89891 0.91805 0.83399 0.92449 0.96151 0.78681 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.19 71.98 0.66 -2.08 16 2 C -0.08 -1.72 1.37 -51.65 -0.07 -1.79 16 3 C -0.12 -2.57 8.44 71.98 0.61 -1.96 16 4 C -0.12 -2.24 7.20 31.12 0.22 -2.02 16 5 C -0.17 -3.63 7.35 31.12 0.23 -3.41 16 6 C 0.06 1.64 3.63 45.44 0.17 1.81 16 7 H 0.08 2.31 7.82 -2.39 -0.02 2.29 16 8 N -0.67 -21.71 5.54 -488.86 -2.71 -24.42 16 9 C 0.06 2.39 5.17 86.30 0.45 2.84 16 10 C 0.21 9.49 2.58 29.85 0.08 9.57 16 11 H 0.05 2.52 7.57 -2.39 -0.02 2.50 16 12 O -0.58 -24.63 9.48 -148.98 -1.41 -26.04 16 13 C -0.57 -32.16 9.34 25.60 0.24 -31.92 16 14 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 15 C 0.03 1.58 5.47 84.65 0.46 2.04 16 16 N -0.94 -59.00 13.96 21.45 0.30 -58.70 16 17 Si 0.94 45.72 26.99 68.60 1.85 47.57 16 18 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 20 H -0.20 -9.31 5.30 99.48 0.53 -8.78 16 21 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.06 1.10 7.94 -2.38 -0.02 1.09 16 24 H 0.05 1.13 7.34 -2.39 -0.02 1.11 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.05 1.37 7.77 -2.39 -0.02 1.35 16 27 H 0.09 1.46 7.96 -2.39 -0.02 1.44 16 28 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 29 H 0.08 1.80 7.33 -2.39 -0.02 1.78 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.35 10.86 7.51 -89.69 -0.67 10.19 16 32 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.37 13.71 9.04 -74.06 -0.67 13.04 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -63.84 278.76 0.61 -63.23 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.46 Total: 25.28 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 3.04 Total: -26.92 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.41 Total: -83.12 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.41 Total: -26.04 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.85 Total: 47.57 kcal Total: -63.84 0.61 -63.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930630773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.089 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds