Wall clock time and date at job start Sun Mar 29 2020 21:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 O 1.21277 * 119.99770 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.47029 * 125.64818 * 359.69547 * 5 3 2 7 7 C 1.54331 * 107.26753 * 178.84751 * 6 5 3 8 8 C 1.55163 * 103.01650 * 338.14312 * 7 6 5 9 9 O 1.42902 * 111.03688 * 277.21364 * 8 7 6 10 10 C 1.50708 * 111.00166 * 153.38295 * 8 7 6 11 11 H 1.07997 * 119.99201 * 247.79918 * 10 8 7 12 12 C 1.37874 * 120.00064 * 67.79882 * 10 8 7 13 13 N 1.31512 * 120.00229 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99777 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47327 * 60.00117 * 14 12 10 16 16 H 1.48503 * 109.47131 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46906 * 299.99846 * 14 12 10 18 18 C 1.47418 * 125.64970 * 180.02562 * 5 3 2 19 19 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 24 24 H 1.09005 * 109.88052 * 298.39436 * 6 5 3 25 25 H 1.09001 * 109.87845 * 59.55597 * 6 5 3 26 26 H 1.08998 * 110.85203 * 219.67747 * 7 6 5 27 27 H 1.09004 * 110.66724 * 96.52072 * 7 6 5 28 28 H 0.96707 * 114.00161 * 292.22085 * 9 8 7 29 29 H 0.97000 * 120.00321 * 180.02562 * 13 12 10 30 30 H 1.09002 * 110.36663 * 322.92907 * 18 5 3 31 31 H 1.08994 * 110.36770 * 85.14394 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.4182 0.6491 0.0075 7 6 5.7690 1.3949 -0.0243 8 6 5.3895 2.7806 -0.6101 9 8 5.3268 2.7347 -2.0370 10 6 6.3523 3.8442 -0.1486 11 1 6.0171 4.6218 0.5217 12 6 7.6610 3.8244 -0.5821 13 7 8.0690 2.8777 -1.3987 14 14 8.8546 5.1423 -0.0094 15 1 8.9664 5.0996 1.4707 16 1 10.1888 4.8984 -0.6143 17 1 8.3575 6.4769 -0.4301 18 6 3.9832 3.0019 0.0011 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 4.3468 0.0456 0.9124 25 1 4.3272 0.0130 -0.8730 26 1 6.4795 0.8832 -0.6735 27 1 6.1744 1.4995 0.9821 28 1 6.1836 2.5977 -2.4641 29 1 8.9898 2.8635 -1.7034 30 1 3.4062 3.6917 -0.6149 31 1 4.0656 3.3818 1.0194 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118279942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:12 Heat of formation + Delta-G solvation = -96.272162 kcal Electronic energy + Delta-G solvation = -14726.070493 eV Core-core repulsion = 12200.031136 eV Total energy + Delta-G solvation = -2526.039356 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.43383 -37.26509 -34.28629 -32.51154 -32.15228 -29.76744 -28.30838 -25.58694 -23.65819 -21.94924 -19.69412 -18.57628 -17.26758 -16.63423 -15.53102 -14.99590 -14.90578 -14.23267 -14.03159 -13.29404 -12.93296 -12.31668 -12.16082 -11.95834 -11.75291 -11.48657 -11.34506 -11.29507 -10.98702 -10.87554 -10.61970 -10.51292 -10.05171 -9.45449 -9.28932 -8.69222 -8.22882 -7.95694 -6.31571 -4.39372 3.13835 3.20436 3.25404 3.28579 3.63093 4.24941 4.90115 5.00508 5.25154 5.26050 5.54303 5.66998 5.75575 5.85211 5.90534 6.01888 6.08574 6.29901 6.33433 6.44731 6.66977 6.87854 6.98394 7.28826 7.31206 7.71840 7.97971 8.18601 8.61972 8.70714 9.29668 9.46645 10.76186 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066290 B = 0.007760 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.282739 B = 3607.296522 C = 3750.052883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.519 3.481 4 O -0.558 6.558 5 N -0.609 5.609 6 C 0.101 3.899 7 C -0.140 4.140 8 C 0.249 3.751 9 O -0.584 6.584 10 C -0.536 4.536 11 H 0.065 0.935 12 C 0.072 3.928 13 N -0.899 5.899 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.118 3.882 19 H 0.059 0.941 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.385 0.615 29 H 0.270 0.730 30 H 0.070 0.930 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 -6.875 2.604 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.308 3.692 4 O -0.438 6.438 5 N -0.341 5.341 6 C -0.022 4.022 7 C -0.179 4.179 8 C 0.208 3.792 9 O -0.395 6.395 10 C -0.574 4.574 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.732 3.268 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.003 4.003 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.237 0.763 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.860 -6.382 2.619 9.051 hybrid contribution 1.497 0.431 0.199 1.571 sum -4.362 -5.951 2.818 7.898 Atomic orbital electron populations 1.21509 0.93481 1.00970 1.03197 1.21584 0.98012 0.94472 1.03895 1.20319 0.80907 0.91486 0.76518 1.90643 1.54663 1.46825 1.51675 1.48658 1.04761 1.09485 1.71238 1.22146 0.89214 0.91239 0.99631 1.23205 0.93295 0.99146 1.02209 1.19584 0.89036 0.91068 0.79537 1.86102 1.37365 1.95865 1.20121 1.21459 0.94513 1.11966 1.29478 0.91686 1.24993 0.98089 0.95706 0.94224 1.69550 1.18184 1.32784 1.33344 0.86443 0.79528 0.81813 0.79016 1.20030 1.21080 1.19964 1.22368 0.94441 0.83448 1.00076 0.92185 0.92507 0.92105 0.89452 0.89295 0.92869 0.92386 0.89879 0.91390 0.76269 0.91998 0.91190 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.20 37.16 0.34 -1.35 16 2 C -0.14 -1.93 5.61 -27.88 -0.16 -2.09 16 3 C 0.52 10.00 7.85 -10.98 -0.09 9.91 16 4 O -0.56 -12.61 16.24 5.56 0.09 -12.52 16 5 N -0.61 -12.30 3.33 -170.50 -0.57 -12.87 16 6 C 0.10 1.81 6.49 -3.06 -0.02 1.79 16 7 C -0.14 -2.98 5.64 -24.89 -0.14 -3.12 16 8 C 0.25 6.04 0.89 -89.61 -0.08 5.96 16 9 O -0.58 -15.12 13.18 -35.23 -0.46 -15.58 16 10 C -0.54 -13.94 8.25 -34.44 -0.28 -14.22 16 11 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 12 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 13 N -0.90 -23.03 10.79 55.43 0.60 -22.44 16 14 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.12 2.70 6.08 -2.52 -0.02 2.69 16 19 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 22 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 27 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 28 H 0.39 10.00 6.93 45.56 0.32 10.32 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.07 1.71 8.04 -51.93 -0.42 1.29 16 31 H 0.07 1.53 8.02 -51.93 -0.42 1.12 16 LS Contribution 261.55 15.07 3.94 3.94 Total: -1.00 -28.64 261.55 -5.80 -34.44 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.84 Total: 8.67 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.53 Total: 1.32 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.03 Total: -35.30 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.37 Total: -28.10 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.64 -5.80 -34.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118279942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.837 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds