Wall clock time and date at job start Sun Mar 29 2020 21:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 O 1.21277 * 119.99770 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.47029 * 125.64818 * 359.69547 * 5 3 2 7 7 C 1.54331 * 107.26753 * 178.84751 * 6 5 3 8 8 C 1.55163 * 103.01650 * 338.14312 * 7 6 5 9 9 O 1.42902 * 111.03688 * 277.21364 * 8 7 6 10 10 C 1.50708 * 111.00166 * 153.38295 * 8 7 6 11 11 H 1.07997 * 119.99201 * 247.79918 * 10 8 7 12 12 C 1.37874 * 120.00064 * 67.79882 * 10 8 7 13 13 N 1.31512 * 120.00229 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99777 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47327 * 60.00117 * 14 12 10 16 16 H 1.48503 * 109.47131 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46906 * 299.99846 * 14 12 10 18 18 C 1.47418 * 125.64970 * 180.02562 * 5 3 2 19 19 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 24 24 H 1.09005 * 109.88052 * 298.39436 * 6 5 3 25 25 H 1.09001 * 109.87845 * 59.55597 * 6 5 3 26 26 H 1.08998 * 110.85203 * 219.67747 * 7 6 5 27 27 H 1.09004 * 110.66724 * 96.52072 * 7 6 5 28 28 H 0.96707 * 114.00161 * 292.22085 * 9 8 7 29 29 H 0.97000 * 120.00321 * 180.02562 * 13 12 10 30 30 H 1.09002 * 110.36663 * 322.92907 * 18 5 3 31 31 H 1.08994 * 110.36770 * 85.14394 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.4182 0.6491 0.0075 7 6 5.7690 1.3949 -0.0243 8 6 5.3895 2.7806 -0.6101 9 8 5.3268 2.7347 -2.0370 10 6 6.3523 3.8442 -0.1486 11 1 6.0171 4.6218 0.5217 12 6 7.6610 3.8244 -0.5821 13 7 8.0690 2.8777 -1.3987 14 14 8.8546 5.1423 -0.0094 15 1 8.9664 5.0996 1.4707 16 1 10.1888 4.8984 -0.6143 17 1 8.3575 6.4769 -0.4301 18 6 3.9832 3.0019 0.0011 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 4.3468 0.0456 0.9124 25 1 4.3272 0.0130 -0.8730 26 1 6.4795 0.8832 -0.6735 27 1 6.1744 1.4995 0.9821 28 1 6.1836 2.5977 -2.4641 29 1 8.9898 2.8635 -1.7034 30 1 3.4062 3.6917 -0.6149 31 1 4.0656 3.3818 1.0194 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118279942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:12 Heat of formation + Delta-G solvation = -116.737589 kcal Electronic energy + Delta-G solvation = -14726.957940 eV Core-core repulsion = 12200.031136 eV Total energy + Delta-G solvation = -2526.926804 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.01795 -38.98799 -36.09600 -34.14771 -33.68913 -31.45792 -30.01330 -27.34300 -25.08704 -23.43179 -21.52376 -20.08140 -19.16872 -18.16132 -17.02824 -16.90588 -16.49968 -15.94119 -15.51011 -14.95920 -14.52017 -13.89813 -13.72379 -13.52291 -13.26230 -13.12097 -13.01700 -12.64384 -12.53143 -12.48817 -12.27499 -12.03250 -11.84733 -11.31104 -10.87990 -10.62948 -10.15896 -9.56204 -8.25977 -6.40750 1.43462 1.45472 1.52511 1.66457 2.12116 2.40236 2.98919 3.61216 3.84812 4.03394 4.21057 4.24335 4.36833 4.40930 4.59757 4.61909 4.79396 4.90185 4.99324 5.06451 5.18727 5.27104 5.38925 5.44079 5.52758 5.76585 6.04967 6.61235 6.68034 7.18953 7.30672 7.44745 8.80324 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066290 B = 0.007760 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.282739 B = 3607.296522 C = 3750.052883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.508 3.492 4 O -0.601 6.601 5 N -0.614 5.614 6 C 0.107 3.893 7 C -0.131 4.131 8 C 0.233 3.767 9 O -0.596 6.596 10 C -0.564 4.564 11 H 0.055 0.945 12 C 0.036 3.964 13 N -0.910 5.910 14 Si 0.962 3.038 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.122 3.878 19 H 0.048 0.952 20 H 0.093 0.907 21 H 0.042 0.958 22 H 0.119 0.881 23 H 0.110 0.890 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.381 0.619 29 H 0.273 0.727 30 H 0.041 0.959 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -8.632 3.270 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C 0.300 3.700 4 O -0.484 6.484 5 N -0.347 5.347 6 C -0.015 4.015 7 C -0.170 4.170 8 C 0.193 3.807 9 O -0.406 6.406 10 C -0.602 4.602 11 H 0.074 0.926 12 C -0.165 4.165 13 N -0.550 5.550 14 Si 0.788 3.212 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.001 4.001 19 H 0.067 0.933 20 H 0.112 0.888 21 H 0.061 0.939 22 H 0.137 0.863 23 H 0.128 0.872 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.233 0.767 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.754 -8.170 3.288 10.520 hybrid contribution 1.448 1.006 -0.031 1.763 sum -4.307 -7.164 3.257 8.971 Atomic orbital electron populations 1.21530 0.92745 1.02893 1.01822 1.21680 0.98515 0.90422 1.06267 1.21469 0.79972 0.93579 0.75007 1.90622 1.55536 1.48797 1.53405 1.48791 1.05762 1.08615 1.71493 1.22213 0.86328 0.90480 1.02459 1.22998 0.95126 0.97535 1.01338 1.19790 0.89562 0.92642 0.78749 1.86087 1.37142 1.96055 1.21345 1.21696 0.95585 1.12766 1.30163 0.92626 1.25623 0.99219 0.97426 0.94251 1.69609 1.18544 1.33459 1.33369 0.85550 0.77752 0.79157 0.78787 1.19468 1.20306 1.20465 1.22124 0.93708 0.84918 0.99334 0.93319 0.88820 0.93858 0.86335 0.87225 0.88844 0.90661 0.90936 0.91656 0.76723 0.91723 0.94057 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.20 71.98 0.66 -2.31 16 2 C -0.13 -3.11 5.61 29.85 0.17 -2.94 16 3 C 0.51 18.87 7.85 87.66 0.69 19.56 16 4 O -0.60 -27.29 16.24 -3.02 -0.05 -27.34 16 5 N -0.61 -24.03 3.33 -811.74 -2.70 -26.73 16 6 C 0.11 3.54 6.49 86.73 0.56 4.11 16 7 C -0.13 -5.45 5.64 31.79 0.18 -5.27 16 8 C 0.23 11.41 0.89 -10.14 -0.01 11.40 16 9 O -0.60 -31.30 13.18 -148.98 -1.96 -33.26 16 10 C -0.56 -29.72 8.25 25.60 0.21 -29.51 16 11 H 0.06 2.94 7.77 -2.91 -0.02 2.92 16 12 C 0.04 1.82 5.30 84.65 0.45 2.27 16 13 N -0.91 -46.43 10.79 21.45 0.23 -46.20 16 14 Si 0.96 40.93 29.54 68.60 2.03 42.96 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 18 C 0.12 5.67 6.08 86.86 0.53 6.20 16 19 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 20 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.04 1.11 8.10 -2.38 -0.02 1.09 16 22 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.07 3.15 7.85 -2.39 -0.02 3.13 16 27 H 0.06 2.70 8.03 -2.38 -0.02 2.68 16 28 H 0.38 20.12 6.93 -74.05 -0.51 19.61 16 29 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 30 H 0.04 2.10 8.04 -2.39 -0.02 2.08 16 31 H 0.07 3.17 8.02 -2.39 -0.02 3.16 16 Total: -1.00 -62.43 261.55 1.59 -60.84 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.60 Total: 26.24 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 3.44 Total: 3.50 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.47 Total: -72.93 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -2.01 Total: -60.61 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -62.43 1.59 -60.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118279942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.896 kcal (2) G-P(sol) polarization free energy of solvation -62.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds