Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46868 * 2 1 4 4 O 1.21273 * 120.00204 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99402 * 180.02562 * 3 2 1 6 6 C 1.47013 * 125.65101 * 0.04476 * 5 3 2 7 7 C 1.54326 * 107.27435 * 181.02303 * 6 5 3 8 8 C 1.55157 * 102.93823 * 22.19004 * 7 6 5 9 9 O 1.42905 * 111.00488 * 82.57478 * 8 7 6 10 10 C 1.50703 * 111.03921 * 206.41183 * 8 7 6 11 11 H 1.07992 * 120.00336 * 115.39535 * 10 8 7 12 12 C 1.37879 * 119.99709 * 295.40038 * 10 8 7 13 13 N 1.31519 * 120.00283 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 120.00008 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47212 * 89.99308 * 14 12 10 16 16 H 1.48500 * 109.47044 * 209.99812 * 14 12 10 17 17 H 1.48501 * 109.46596 * 329.99418 * 14 12 10 18 18 C 1.47428 * 125.64492 * 179.97438 * 5 3 2 19 19 H 1.09000 * 109.47548 * 59.99404 * 1 2 3 20 20 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46757 * 299.99508 * 1 2 3 22 22 H 1.08999 * 109.46889 * 240.00194 * 2 1 3 23 23 H 1.08996 * 109.47072 * 120.00540 * 2 1 3 24 24 H 1.09002 * 109.88115 * 300.43802 * 6 5 3 25 25 H 1.09003 * 109.88368 * 61.45162 * 6 5 3 26 26 H 1.09000 * 110.72133 * 263.83108 * 7 6 5 27 27 H 1.08995 * 110.72116 * 140.55087 * 7 6 5 28 28 H 0.96705 * 113.99788 * 67.80231 * 9 8 7 29 29 H 0.96996 * 119.99879 * 180.02562 * 13 12 10 30 30 H 1.09003 * 110.36539 * 37.07182 * 18 5 3 31 31 H 1.08994 * 110.36519 * 274.75119 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4181 0.6491 -0.0021 7 6 5.7690 1.3947 0.0242 8 6 5.3896 2.7805 0.6100 9 8 5.3268 2.7336 2.0369 10 6 6.3521 3.8446 0.1493 11 1 6.0049 4.6514 -0.4790 12 6 7.6761 3.7880 0.5299 13 7 8.0990 2.8057 1.2954 14 14 8.8695 5.1066 -0.0418 15 1 8.8909 6.2163 0.9449 16 1 10.2303 4.5244 -0.1616 17 1 8.4358 5.6274 -1.3631 18 6 3.9833 3.0019 -0.0011 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 4.3265 0.0169 0.8812 25 1 4.3459 0.0398 -0.9030 26 1 6.1715 1.4992 -0.9834 27 1 6.4794 0.8830 0.6734 28 1 6.1836 2.5965 2.4640 29 1 9.0303 2.7662 1.5634 30 1 3.4063 3.6917 0.6149 31 1 4.0673 3.3810 -1.0196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118279943.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = -96.414254 kcal Electronic energy + Delta-G solvation = -14727.952151 eV Core-core repulsion = 12201.906633 eV Total energy + Delta-G solvation = -2526.045518 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.43469 -37.27002 -34.28103 -32.51031 -32.19188 -29.74687 -28.30769 -25.58390 -23.65949 -21.94111 -19.70520 -18.57597 -17.25439 -16.63286 -15.52992 -14.99712 -14.90393 -14.24024 -14.03283 -13.29685 -12.93093 -12.31434 -12.16485 -11.95658 -11.76909 -11.48170 -11.35355 -11.29049 -10.98531 -10.90559 -10.60395 -10.49474 -10.04747 -9.44086 -9.28065 -8.69993 -8.23412 -7.95509 -6.31301 -4.39462 3.13845 3.18926 3.26280 3.29526 3.63279 4.25019 4.90609 5.00565 5.25190 5.26107 5.54856 5.67012 5.75268 5.85364 5.90283 6.02422 6.08668 6.30279 6.33498 6.44758 6.67112 6.89141 6.98845 7.30110 7.32535 7.71495 7.98265 8.18710 8.62751 8.70730 9.29398 9.41885 10.76132 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066154 B = 0.007774 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.153756 B = 3601.039732 C = 3746.383334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.519 3.481 4 O -0.559 6.559 5 N -0.609 5.609 6 C 0.100 3.900 7 C -0.137 4.137 8 C 0.247 3.753 9 O -0.584 6.584 10 C -0.536 4.536 11 H 0.065 0.935 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.904 3.096 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.119 3.881 19 H 0.059 0.941 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.383 0.617 29 H 0.269 0.731 30 H 0.069 0.931 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 -6.790 -2.458 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.308 3.692 4 O -0.438 6.438 5 N -0.342 5.342 6 C -0.023 4.023 7 C -0.176 4.176 8 C 0.207 3.793 9 O -0.393 6.393 10 C -0.574 4.574 11 H 0.083 0.917 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.003 4.003 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.234 0.766 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.920 -6.304 -2.492 9.000 hybrid contribution 1.505 0.431 -0.189 1.577 sum -4.414 -5.874 -2.681 7.821 Atomic orbital electron populations 1.21510 0.93483 1.00970 1.03195 1.21583 0.98009 0.94476 1.03897 1.20318 0.80911 0.91483 0.76517 1.90642 1.54670 1.46824 1.51680 1.48666 1.04766 1.09486 1.71235 1.22160 0.89266 0.91236 0.99631 1.23175 0.93202 0.98990 1.02241 1.19608 0.89083 0.91226 0.79408 1.86117 1.36982 1.95875 1.20343 1.21478 0.93395 1.10329 1.32209 0.91659 1.25002 0.98160 0.95687 0.94202 1.69652 1.17094 1.31146 1.35771 0.86401 0.79743 0.81447 0.79314 1.20367 1.21033 1.19690 1.22365 0.94377 0.83462 1.00098 0.92191 0.92507 0.92103 0.89449 0.89296 0.92420 0.92903 0.91393 0.89690 0.76581 0.92131 0.91211 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.20 37.16 0.34 -1.35 16 2 C -0.14 -1.93 5.61 -27.88 -0.16 -2.09 16 3 C 0.52 10.00 7.85 -10.98 -0.09 9.92 16 4 O -0.56 -12.61 16.24 5.56 0.09 -12.52 16 5 N -0.61 -12.31 3.33 -170.51 -0.57 -12.87 16 6 C 0.10 1.80 6.49 -3.07 -0.02 1.78 16 7 C -0.14 -2.93 5.51 -24.90 -0.14 -3.07 16 8 C 0.25 6.00 0.89 -89.61 -0.08 5.92 16 9 O -0.58 -15.00 13.19 -35.23 -0.46 -15.46 16 10 C -0.54 -13.92 8.26 -34.44 -0.28 -14.21 16 11 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 12 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 13 N -0.90 -22.92 10.74 55.43 0.60 -22.32 16 14 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 C 0.12 2.71 6.08 -2.52 -0.02 2.69 16 19 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.83 8.10 -51.92 -0.42 0.41 16 22 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 27 H 0.08 1.89 7.69 -51.93 -0.40 1.49 16 28 H 0.38 9.85 7.18 45.56 0.33 10.18 16 29 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 30 H 0.07 1.70 8.04 -51.93 -0.42 1.28 16 31 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -28.58 261.48 -5.78 -34.36 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.82 Total: 8.52 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.53 Total: 1.33 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.03 Total: -35.20 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.37 Total: -27.98 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.58 -5.78 -34.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118279943.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.051 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds