Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46868 * 2 1 4 4 O 1.21273 * 120.00204 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99402 * 180.02562 * 3 2 1 6 6 C 1.47013 * 125.65101 * 0.04476 * 5 3 2 7 7 C 1.54326 * 107.27435 * 181.02303 * 6 5 3 8 8 C 1.55157 * 102.93823 * 22.19004 * 7 6 5 9 9 O 1.42905 * 111.00488 * 82.57478 * 8 7 6 10 10 C 1.50703 * 111.03921 * 206.41183 * 8 7 6 11 11 H 1.07992 * 120.00336 * 115.39535 * 10 8 7 12 12 C 1.37879 * 119.99709 * 295.40038 * 10 8 7 13 13 N 1.31519 * 120.00283 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 120.00008 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47212 * 89.99308 * 14 12 10 16 16 H 1.48500 * 109.47044 * 209.99812 * 14 12 10 17 17 H 1.48501 * 109.46596 * 329.99418 * 14 12 10 18 18 C 1.47428 * 125.64492 * 179.97438 * 5 3 2 19 19 H 1.09000 * 109.47548 * 59.99404 * 1 2 3 20 20 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46757 * 299.99508 * 1 2 3 22 22 H 1.08999 * 109.46889 * 240.00194 * 2 1 3 23 23 H 1.08996 * 109.47072 * 120.00540 * 2 1 3 24 24 H 1.09002 * 109.88115 * 300.43802 * 6 5 3 25 25 H 1.09003 * 109.88368 * 61.45162 * 6 5 3 26 26 H 1.09000 * 110.72133 * 263.83108 * 7 6 5 27 27 H 1.08995 * 110.72116 * 140.55087 * 7 6 5 28 28 H 0.96705 * 113.99788 * 67.80231 * 9 8 7 29 29 H 0.96996 * 119.99879 * 180.02562 * 13 12 10 30 30 H 1.09003 * 110.36539 * 37.07182 * 18 5 3 31 31 H 1.08994 * 110.36519 * 274.75119 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4181 0.6491 -0.0021 7 6 5.7690 1.3947 0.0242 8 6 5.3896 2.7805 0.6100 9 8 5.3268 2.7336 2.0369 10 6 6.3521 3.8446 0.1493 11 1 6.0049 4.6514 -0.4790 12 6 7.6761 3.7880 0.5299 13 7 8.0990 2.8057 1.2954 14 14 8.8695 5.1066 -0.0418 15 1 8.8909 6.2163 0.9449 16 1 10.2303 4.5244 -0.1616 17 1 8.4358 5.6274 -1.3631 18 6 3.9833 3.0019 -0.0011 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 4.3265 0.0169 0.8812 25 1 4.3459 0.0398 -0.9030 26 1 6.1715 1.4992 -0.9834 27 1 6.4794 0.8830 0.6734 28 1 6.1836 2.5965 2.4640 29 1 9.0303 2.7662 1.5634 30 1 3.4063 3.6917 0.6149 31 1 4.0673 3.3810 -1.0196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118279943.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = -116.850268 kcal Electronic energy + Delta-G solvation = -14728.838324 eV Core-core repulsion = 12201.906633 eV Total energy + Delta-G solvation = -2526.931690 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01967 -38.99188 -36.08685 -34.18209 -33.68925 -31.43775 -30.01359 -27.34053 -25.08754 -23.42709 -21.53356 -20.08297 -19.15064 -18.16201 -17.03104 -16.89957 -16.50249 -15.94980 -15.51106 -14.95824 -14.52253 -13.90702 -13.72093 -13.53527 -13.26438 -13.12431 -13.01236 -12.66882 -12.53775 -12.47040 -12.25978 -12.03258 -11.84217 -11.28955 -10.87796 -10.63583 -10.15948 -9.56099 -8.25558 -6.40702 1.42098 1.45282 1.53869 1.66382 2.12215 2.40270 2.99329 3.60782 3.84238 4.03543 4.21130 4.24307 4.36708 4.41489 4.59575 4.62094 4.79377 4.90477 4.99342 5.06471 5.19155 5.27248 5.38935 5.45305 5.54050 5.76721 6.05494 6.61785 6.68131 7.18893 7.30574 7.41273 8.80493 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066154 B = 0.007774 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.153756 B = 3601.039732 C = 3746.383334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.508 3.492 4 O -0.601 6.601 5 N -0.614 5.614 6 C 0.106 3.894 7 C -0.129 4.129 8 C 0.232 3.768 9 O -0.595 6.595 10 C -0.564 4.564 11 H 0.054 0.946 12 C 0.037 3.963 13 N -0.908 5.908 14 Si 0.961 3.039 15 H -0.280 1.280 16 H -0.276 1.276 17 H -0.272 1.272 18 C 0.123 3.877 19 H 0.048 0.952 20 H 0.093 0.907 21 H 0.042 0.958 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.380 0.620 29 H 0.272 0.728 30 H 0.041 0.959 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 -8.548 -3.072 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C 0.300 3.700 4 O -0.483 6.483 5 N -0.347 5.347 6 C -0.015 4.015 7 C -0.167 4.167 8 C 0.192 3.808 9 O -0.404 6.404 10 C -0.602 4.602 11 H 0.073 0.927 12 C -0.165 4.165 13 N -0.547 5.547 14 Si 0.787 3.213 15 H -0.206 1.206 16 H -0.201 1.201 17 H -0.197 1.197 18 C -0.001 4.001 19 H 0.067 0.933 20 H 0.112 0.888 21 H 0.062 0.938 22 H 0.136 0.864 23 H 0.128 0.872 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.230 0.770 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.823 -8.093 -3.108 10.443 hybrid contribution 1.462 1.005 0.026 1.775 sum -4.361 -7.087 -3.082 8.874 Atomic orbital electron populations 1.21531 0.92738 1.02894 1.01825 1.21679 0.98521 0.90433 1.06261 1.21466 0.79974 0.93574 0.75006 1.90620 1.55535 1.48790 1.53399 1.48797 1.05761 1.08613 1.71495 1.22220 0.86394 0.90493 1.02436 1.22965 0.95029 0.97449 1.01296 1.19801 0.89579 0.92724 0.78674 1.86102 1.36779 1.96054 1.21480 1.21695 0.94482 1.11049 1.32964 0.92749 1.25616 0.99248 0.97403 0.94207 1.69708 1.17499 1.31803 1.35708 0.85512 0.78069 0.79095 0.78660 1.20560 1.20145 1.19657 1.22121 0.93671 0.84931 0.99334 0.93330 0.88823 0.93839 0.86360 0.87215 0.90684 0.88923 0.91790 0.90767 0.76991 0.91809 0.94009 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.20 71.98 0.66 -2.31 16 2 C -0.13 -3.12 5.61 29.85 0.17 -2.95 16 3 C 0.51 18.87 7.85 87.66 0.69 19.56 16 4 O -0.60 -27.27 16.24 -3.01 -0.05 -27.32 16 5 N -0.61 -24.05 3.33 -811.76 -2.70 -26.75 16 6 C 0.11 3.54 6.49 86.73 0.56 4.10 16 7 C -0.13 -5.36 5.51 31.78 0.18 -5.19 16 8 C 0.23 11.36 0.89 -10.14 -0.01 11.35 16 9 O -0.59 -30.98 13.19 -148.98 -1.96 -32.95 16 10 C -0.56 -29.69 8.26 25.60 0.21 -29.48 16 11 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 12 C 0.04 1.86 5.27 84.65 0.45 2.30 16 13 N -0.91 -46.11 10.74 21.45 0.23 -45.88 16 14 Si 0.96 40.90 29.54 68.60 2.03 42.93 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 C 0.12 5.68 6.08 86.86 0.53 6.21 16 19 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 20 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 21 H 0.04 1.11 8.10 -2.38 -0.02 1.09 16 22 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.06 2.67 8.03 -2.39 -0.02 2.65 16 27 H 0.07 3.24 7.69 -2.39 -0.02 3.22 16 28 H 0.38 19.81 7.18 -74.05 -0.53 19.28 16 29 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 30 H 0.04 2.12 8.04 -2.39 -0.02 2.10 16 31 H 0.07 3.17 8.03 -2.39 -0.02 3.15 16 Total: -1.00 -62.20 261.48 1.56 -60.64 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.58 Total: 25.72 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 3.43 Total: 3.59 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -2.47 Total: -72.62 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -2.01 Total: -60.27 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -62.20 1.56 -60.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118279943.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.206 kcal (2) G-P(sol) polarization free energy of solvation -62.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds