Wall clock time and date at job start Sun Mar 29 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37092 * 120.00401 * 2 1 4 4 H 1.07995 * 120.00245 * 202.40558 * 3 2 1 5 5 C 1.38957 * 119.99818 * 22.40911 * 3 2 1 6 6 N 1.31409 * 119.99741 * 11.60771 * 5 3 2 7 7 Si 1.86798 * 120.00009 * 191.61070 * 5 3 2 8 8 H 1.48501 * 109.47111 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47039 * 119.99576 * 7 5 3 10 10 H 1.48494 * 109.47079 * 239.99716 * 7 5 3 11 11 C 1.34780 * 120.00111 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00289 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99766 * 0.27504 * 11 2 1 14 14 C 1.53004 * 109.47185 * 179.72221 * 13 11 2 15 15 O 1.42899 * 112.84673 * 53.80264 * 14 13 11 16 16 C 1.53780 * 113.61492 * 282.49575 * 14 13 11 17 17 C 1.53779 * 87.07830 * 220.01734 * 16 14 13 18 18 C 1.53773 * 113.61462 * 184.99593 * 14 13 11 19 19 H 1.09003 * 109.46691 * 272.14596 * 1 2 3 20 20 H 1.08998 * 109.47197 * 32.14709 * 1 2 3 21 21 H 1.09004 * 109.47315 * 152.15071 * 1 2 3 22 22 H 0.96995 * 119.99696 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.46889 * 299.72064 * 13 11 2 24 24 H 1.09002 * 109.47104 * 59.71983 * 13 11 2 25 25 H 0.96704 * 114.00341 * 309.66752 * 15 14 13 26 26 H 1.09001 * 113.61293 * 334.57085 * 16 14 13 27 27 H 1.09001 * 113.61142 * 105.46812 * 16 14 13 28 28 H 1.09001 * 113.61768 * 270.88132 * 17 16 14 29 29 H 1.09006 * 113.68895 * 139.99388 * 17 16 14 30 30 H 1.09004 * 113.62009 * 254.53241 * 18 14 13 31 31 H 1.09007 * 113.61377 * 25.34995 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1693 1.2225 -0.3565 5 6 1.5344 2.3452 0.4588 6 7 0.3897 2.2706 1.0998 7 14 2.3334 4.0078 0.1641 8 1 3.6079 3.8205 -0.5747 9 1 1.4185 4.8620 -0.6349 10 1 2.6093 4.6624 1.4681 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0074 14 6 2.3795 -3.6353 -0.0135 15 8 3.3313 -3.5573 1.0495 16 6 3.0115 -3.8982 -1.3906 17 6 2.8693 -5.3980 -1.0821 18 6 1.7129 -5.0149 -0.1435 19 1 -0.3633 0.0385 1.0270 20 1 -0.3633 0.8701 -0.5468 21 1 -0.3634 -0.9087 -0.4801 22 1 -0.0404 3.0790 1.4198 23 1 0.7587 -2.5347 0.8824 24 1 0.7586 -2.5254 -0.8976 25 1 3.7709 -2.6990 1.1217 26 1 2.3951 -3.5636 -2.2250 27 1 4.0463 -3.5643 -1.4670 28 1 3.7302 -5.8208 -0.5643 29 1 2.5566 -5.9938 -1.9396 30 1 1.6993 -5.5828 0.7869 31 1 0.7407 -4.9855 -0.6356 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136490475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:34 Heat of formation + Delta-G solvation = -60.955766 kcal Electronic energy + Delta-G solvation = -14766.221635 eV Core-core repulsion = 12241.713713 eV Total energy + Delta-G solvation = -2524.507923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.64218 -37.79009 -34.79861 -33.78451 -31.75895 -29.56270 -26.28193 -25.39840 -24.54958 -22.70212 -19.25335 -18.93660 -16.93691 -16.19007 -15.73631 -14.92331 -14.74984 -14.61833 -14.06642 -13.87945 -12.98931 -12.59703 -12.27303 -11.92915 -11.46271 -11.43219 -11.27636 -10.99961 -10.91076 -10.82902 -10.53610 -10.35018 -10.31273 -9.89002 -9.14906 -9.04920 -8.40627 -7.74520 -6.35707 -3.92779 3.12073 3.23041 3.29871 3.82377 4.09836 4.54316 4.77237 4.92516 5.07705 5.12278 5.26219 5.32965 5.76349 5.86259 5.92985 5.98291 6.02941 6.10821 6.20335 6.35218 6.46180 6.63453 6.71429 6.84817 7.18693 7.52716 8.07447 8.33970 8.48427 9.14438 9.38335 9.92173 10.67780 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061349 B = 0.007860 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.293489 B = 3561.383930 C = 3762.857783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.442 5.442 3 C -0.308 4.308 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.927 3.073 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.446 3.554 12 O -0.595 6.595 13 C -0.152 4.152 14 C 0.137 3.863 15 O -0.557 6.557 16 C -0.158 4.158 17 C -0.136 4.136 18 C -0.131 4.131 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.027 0.973 22 H 0.267 0.733 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.395 0.605 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 -8.424 -3.389 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.159 5.159 3 C -0.436 4.436 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.754 3.246 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.235 3.765 12 O -0.483 6.483 13 C -0.192 4.192 14 C 0.095 3.905 15 O -0.371 6.371 16 C -0.196 4.196 17 C -0.173 4.173 18 C -0.168 4.168 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.046 0.954 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.252 0.748 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.571 -8.828 -3.207 9.523 hybrid contribution 0.156 1.586 -0.131 1.599 sum -1.415 -7.242 -3.338 8.099 Atomic orbital electron populations 1.21536 0.81062 0.98857 1.01853 1.43628 1.05625 1.04919 1.61755 1.19741 0.99543 0.83858 1.40491 0.88196 1.25370 0.96475 1.00183 0.95285 1.70007 1.17369 1.29274 1.35493 0.85846 0.79268 0.81309 0.78197 1.19200 1.20638 1.20682 1.20043 0.87989 0.84761 0.83710 1.90330 1.14083 1.86783 1.57127 1.22164 0.99351 0.94394 1.03300 1.21636 0.88794 0.92574 0.87528 1.86187 1.56977 1.42423 1.51553 1.23512 1.02427 0.95619 0.98039 1.22745 0.98801 0.96747 0.98998 1.23065 0.97893 0.95745 1.00135 0.92251 0.91250 0.95418 0.92242 0.89758 0.89696 0.74847 0.90199 0.90801 0.90186 0.91965 0.90985 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.46 8.53 59.84 0.51 2.97 16 2 N -0.44 -11.25 3.02 -122.19 -0.37 -11.62 16 3 C -0.31 -8.55 9.29 -14.93 -0.14 -8.69 16 4 H 0.10 2.89 7.40 -52.49 -0.39 2.51 16 5 C 0.03 0.79 5.11 -17.47 -0.09 0.70 16 6 N -0.88 -23.44 10.62 55.50 0.59 -22.85 16 7 Si 0.93 20.67 29.57 -169.99 -5.03 15.65 16 8 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.45 10.63 7.39 -10.98 -0.08 10.55 16 12 O -0.60 -15.59 13.28 -14.27 -0.19 -15.78 16 13 C -0.15 -2.82 3.86 -27.88 -0.11 -2.93 16 14 C 0.14 2.42 1.10 -89.81 -0.10 2.32 16 15 O -0.56 -11.24 13.39 -55.04 -0.74 -11.98 16 16 C -0.16 -2.58 7.17 -25.92 -0.19 -2.77 16 17 C -0.14 -1.85 8.02 -25.92 -0.21 -2.06 16 18 C -0.13 -1.85 7.47 -25.92 -0.19 -2.04 16 19 H 0.06 1.37 7.54 -51.93 -0.39 0.98 16 20 H 0.07 1.62 7.06 -51.93 -0.37 1.25 16 21 H 0.03 0.50 6.35 -51.93 -0.33 0.17 16 22 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 23 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 24 H 0.08 1.39 7.31 -51.93 -0.38 1.01 16 25 H 0.39 8.52 6.20 45.56 0.28 8.81 16 26 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.06 8.10 -51.92 -0.42 0.64 16 LS Contribution 256.12 15.07 3.86 3.86 Total: -1.00 -29.58 256.12 -6.12 -35.70 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -3.66 Total: 8.95 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.59 Total: -1.94 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.22 Total: -34.47 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.93 Total: -27.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.58 -6.12 -35.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136490475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.254 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds