Wall clock time and date at job start Sun Mar 29 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37092 * 120.00401 * 2 1 4 4 H 1.07995 * 120.00245 * 202.40558 * 3 2 1 5 5 C 1.38957 * 119.99818 * 22.40911 * 3 2 1 6 6 N 1.31409 * 119.99741 * 11.60771 * 5 3 2 7 7 Si 1.86798 * 120.00009 * 191.61070 * 5 3 2 8 8 H 1.48501 * 109.47111 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47039 * 119.99576 * 7 5 3 10 10 H 1.48494 * 109.47079 * 239.99716 * 7 5 3 11 11 C 1.34780 * 120.00111 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00289 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99766 * 0.27504 * 11 2 1 14 14 C 1.53004 * 109.47185 * 179.72221 * 13 11 2 15 15 O 1.42899 * 112.84673 * 53.80264 * 14 13 11 16 16 C 1.53780 * 113.61492 * 282.49575 * 14 13 11 17 17 C 1.53779 * 87.07830 * 220.01734 * 16 14 13 18 18 C 1.53773 * 113.61462 * 184.99593 * 14 13 11 19 19 H 1.09003 * 109.46691 * 272.14596 * 1 2 3 20 20 H 1.08998 * 109.47197 * 32.14709 * 1 2 3 21 21 H 1.09004 * 109.47315 * 152.15071 * 1 2 3 22 22 H 0.96995 * 119.99696 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.46889 * 299.72064 * 13 11 2 24 24 H 1.09002 * 109.47104 * 59.71983 * 13 11 2 25 25 H 0.96704 * 114.00341 * 309.66752 * 15 14 13 26 26 H 1.09001 * 113.61293 * 334.57085 * 16 14 13 27 27 H 1.09001 * 113.61142 * 105.46812 * 16 14 13 28 28 H 1.09001 * 113.61768 * 270.88132 * 17 16 14 29 29 H 1.09006 * 113.68895 * 139.99388 * 17 16 14 30 30 H 1.09004 * 113.62009 * 254.53241 * 18 14 13 31 31 H 1.09007 * 113.61377 * 25.34995 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1693 1.2225 -0.3565 5 6 1.5344 2.3452 0.4588 6 7 0.3897 2.2706 1.0998 7 14 2.3334 4.0078 0.1641 8 1 3.6079 3.8205 -0.5747 9 1 1.4185 4.8620 -0.6349 10 1 2.6093 4.6624 1.4681 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0074 14 6 2.3795 -3.6353 -0.0135 15 8 3.3313 -3.5573 1.0495 16 6 3.0115 -3.8982 -1.3906 17 6 2.8693 -5.3980 -1.0821 18 6 1.7129 -5.0149 -0.1435 19 1 -0.3633 0.0385 1.0270 20 1 -0.3633 0.8701 -0.5468 21 1 -0.3634 -0.9087 -0.4801 22 1 -0.0404 3.0790 1.4198 23 1 0.7587 -2.5347 0.8824 24 1 0.7586 -2.5254 -0.8976 25 1 3.7709 -2.6990 1.1217 26 1 2.3951 -3.5636 -2.2250 27 1 4.0463 -3.5643 -1.4670 28 1 3.7302 -5.8208 -0.5643 29 1 2.5566 -5.9938 -1.9396 30 1 1.6993 -5.5828 0.7869 31 1 0.7407 -4.9855 -0.6356 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136490475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:34 Heat of formation + Delta-G solvation = -80.570326 kcal Electronic energy + Delta-G solvation = -14767.072186 eV Core-core repulsion = 12241.713713 eV Total energy + Delta-G solvation = -2525.358474 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.17041 -39.44941 -36.69518 -35.27943 -33.73703 -31.14630 -28.14392 -26.60341 -26.37729 -24.12121 -20.80084 -20.46418 -18.92501 -17.97354 -17.17121 -16.66957 -16.41689 -16.19040 -15.59588 -15.53835 -14.57080 -14.20603 -13.81776 -13.41542 -13.21458 -13.12315 -13.02669 -12.69261 -12.53245 -12.24004 -12.13272 -12.03128 -11.71246 -11.22207 -11.04099 -10.49948 -10.26710 -9.72132 -8.35346 -6.01139 1.34171 1.39855 1.53538 1.98516 2.25886 3.02338 3.07437 3.25996 3.70865 3.77802 3.90985 3.98161 4.32570 4.47340 4.60229 4.69472 4.78966 4.84610 4.88501 5.03047 5.08928 5.19119 5.37310 5.40362 5.44155 5.50041 6.06972 6.43938 6.77730 7.15572 7.46060 8.00052 8.66344 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061349 B = 0.007860 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.293489 B = 3561.383930 C = 3762.857783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.462 5.462 3 C -0.345 4.345 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.897 5.897 7 Si 0.990 3.010 8 H -0.274 1.274 9 H -0.265 1.265 10 H -0.276 1.276 11 C 0.437 3.563 12 O -0.627 6.627 13 C -0.140 4.140 14 C 0.111 3.889 15 O -0.571 6.571 16 C -0.164 4.164 17 C -0.124 4.124 18 C -0.116 4.116 19 H 0.045 0.955 20 H 0.052 0.948 21 H 0.072 0.928 22 H 0.273 0.727 23 H 0.094 0.906 24 H 0.116 0.884 25 H 0.384 0.616 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -9.373 -4.085 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.180 5.180 3 C -0.474 4.474 4 H 0.091 0.909 5 C -0.205 4.205 6 N -0.536 5.536 7 Si 0.813 3.187 8 H -0.198 1.198 9 H -0.190 1.190 10 H -0.202 1.202 11 C 0.228 3.772 12 O -0.517 6.517 13 C -0.180 4.180 14 C 0.069 3.931 15 O -0.383 6.383 16 C -0.202 4.202 17 C -0.161 4.161 18 C -0.153 4.153 19 H 0.064 0.936 20 H 0.071 0.929 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.113 0.887 24 H 0.134 0.866 25 H 0.238 0.762 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.969 -9.803 -3.902 10.960 hybrid contribution 0.604 1.850 0.094 1.949 sum -2.364 -7.953 -3.808 9.129 Atomic orbital electron populations 1.21480 0.79307 1.00313 1.01217 1.43901 1.06852 1.04823 1.62375 1.19687 0.99273 0.85878 1.42513 0.90885 1.26101 0.96983 1.02919 0.94508 1.70077 1.17911 1.30379 1.35241 0.84931 0.78307 0.77235 0.78197 1.19847 1.18990 1.20169 1.21044 0.88037 0.86142 0.81981 1.90311 1.15886 1.87573 1.57911 1.22179 0.99382 0.91314 1.05148 1.22161 0.88851 0.94429 0.87641 1.86178 1.57699 1.41515 1.52930 1.23571 1.00945 0.97970 0.97728 1.22695 0.98509 0.95014 0.99889 1.23116 0.99135 0.92422 1.00623 0.93625 0.92891 0.90997 0.91695 0.88738 0.86555 0.76173 0.88883 0.93539 0.90962 0.88852 0.90702 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.21 8.53 127.77 1.09 6.30 16 2 N -0.46 -23.66 3.02 -658.89 -1.99 -25.64 16 3 C -0.35 -19.63 9.29 84.04 0.78 -18.85 16 4 H 0.07 4.43 7.40 -2.91 -0.02 4.41 16 5 C 0.00 -0.18 5.11 84.93 0.43 0.25 16 6 N -0.90 -47.56 10.62 21.67 0.23 -47.33 16 7 Si 0.99 42.53 29.57 68.60 2.03 44.56 16 8 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 9 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 11 C 0.44 20.92 7.39 87.66 0.65 21.56 16 12 O -0.63 -33.86 13.28 15.87 0.21 -33.65 16 13 C -0.14 -4.92 3.86 29.85 0.12 -4.80 16 14 C 0.11 3.73 1.10 -10.27 -0.01 3.72 16 15 O -0.57 -23.10 13.39 -130.04 -1.74 -24.84 16 16 C -0.16 -5.11 7.17 31.12 0.22 -4.88 16 17 C -0.12 -3.00 8.02 31.12 0.25 -2.75 16 18 C -0.12 -2.83 7.47 31.12 0.23 -2.60 16 19 H 0.05 2.08 7.54 -2.39 -0.02 2.06 16 20 H 0.05 2.44 7.06 -2.39 -0.02 2.42 16 21 H 0.07 2.42 6.35 -2.38 -0.02 2.40 16 22 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 23 H 0.09 3.14 8.11 -2.39 -0.02 3.12 16 24 H 0.12 3.34 7.31 -2.39 -0.02 3.32 16 25 H 0.38 17.20 6.20 -74.05 -0.46 16.74 16 26 H 0.09 2.60 8.04 -2.39 -0.02 2.58 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 2.21 8.10 -2.38 -0.02 2.19 16 Total: -1.00 -65.22 256.12 3.17 -62.05 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.67 Total: 26.92 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 3.76 Total: -2.06 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.76 Total: -72.98 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -1.53 Total: -58.50 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -65.22 3.17 -62.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136490475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.520 kcal (2) G-P(sol) polarization free energy of solvation -65.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds