Wall clock time and date at job start Sun Mar 29 2020 21:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.91132 * 2 1 4 4 C 1.54907 * 111.00367 * 123.89761 * 2 1 3 5 5 N 1.47430 * 104.83058 * 155.08461 * 4 2 1 6 6 C 1.34773 * 125.64458 * 155.91053 * 5 4 2 7 7 O 1.21282 * 120.00156 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99678 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47093 * 179.97438 * 8 6 5 10 10 H 1.08000 * 120.00020 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00179 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99866 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47127 * 89.99535 * 13 11 9 15 15 H 1.48503 * 109.47244 * 209.99552 * 13 11 9 16 16 H 1.48495 * 109.47122 * 329.99750 * 13 11 9 17 17 C 1.47014 * 108.70471 * 335.87277 * 5 4 2 18 18 C 1.54331 * 107.26998 * 1.05754 * 17 5 4 19 19 H 1.09000 * 110.87198 * 263.75468 * 18 17 5 20 20 O 1.42903 * 110.71518 * 140.55636 * 18 17 5 21 21 H 1.09000 * 109.46980 * 183.89821 * 1 2 3 22 22 H 1.08992 * 109.47208 * 303.90503 * 1 2 3 23 23 H 1.08998 * 109.46948 * 63.90766 * 1 2 3 24 24 H 1.08997 * 110.36868 * 273.92606 * 4 2 1 25 25 H 1.09001 * 110.36760 * 36.25145 * 4 2 1 26 26 H 1.08999 * 109.47120 * 299.99418 * 8 6 5 27 27 H 1.08995 * 109.47095 * 59.99858 * 8 6 5 28 28 H 0.97008 * 119.99969 * 180.02562 * 12 11 9 29 29 H 1.08999 * 109.88743 * 241.64099 * 17 5 4 30 30 H 1.08997 * 109.88268 * 120.47140 * 17 5 4 31 31 H 0.96700 * 114.00311 * 66.48015 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 1.2004 5 7 3.4272 -1.2430 0.7734 6 6 4.4476 -1.5615 1.5941 7 8 4.3008 -1.4997 2.7964 8 6 5.7715 -1.9932 1.0178 9 6 6.7346 -2.2892 2.1385 10 1 6.4195 -2.1764 3.1653 11 6 8.0177 -2.7051 1.8530 12 7 8.8584 -2.9629 2.8309 13 14 8.5626 -2.9009 0.0770 14 1 9.1354 -1.6199 -0.4092 15 1 9.5917 -3.9680 -0.0104 16 1 7.3940 -3.2704 -0.7615 17 6 3.4675 -1.2741 -0.6959 18 6 2.0862 -0.8080 -1.2021 19 1 1.4452 -1.6615 -1.4229 20 8 2.2252 0.0284 -2.3525 21 1 -0.3633 -1.0253 0.0699 22 1 -0.3633 0.5732 0.8529 23 1 -0.3633 0.4520 -0.9229 24 1 2.1559 -0.1719 2.0837 25 1 1.4519 -1.6703 1.4025 26 1 5.6299 -2.8895 0.4139 27 1 6.1741 -1.1949 0.3946 28 1 9.7613 -3.2552 2.6300 29 1 3.6651 -2.2893 -1.0399 30 1 4.2426 -0.5997 -1.0598 31 1 2.5696 -0.4288 -3.1319 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143193751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:32 Heat of formation + Delta-G solvation = -89.007968 kcal Electronic energy + Delta-G solvation = -14380.807784 eV Core-core repulsion = 11855.083427 eV Total energy + Delta-G solvation = -2525.724357 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77427 -37.70408 -35.41084 -32.93158 -32.57061 -29.70187 -28.53059 -26.40245 -23.43344 -22.26862 -20.42995 -18.74019 -17.60507 -16.99451 -15.93980 -15.76765 -14.92002 -14.43054 -14.17501 -13.86351 -13.30772 -13.10696 -12.86667 -12.56627 -12.18808 -11.93275 -11.71496 -11.44643 -11.19073 -10.81803 -10.60426 -10.51383 -10.27804 -9.99262 -9.26340 -8.82999 -8.59075 -8.22552 -6.04098 -4.03886 3.24963 3.30589 3.32696 3.40240 3.52640 4.05728 4.38428 4.39495 4.48362 4.86798 5.08538 5.26001 5.29325 5.36158 5.52178 5.64798 5.70197 5.81347 5.84874 5.96903 6.02017 6.18261 6.57073 6.75464 6.90251 7.42797 7.52986 8.04763 8.53909 9.04122 9.16235 9.54064 11.08928 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044671 B = 0.007968 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.659165 B = 3513.143074 C = 4068.083499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.110 3.890 5 N -0.633 5.633 6 C 0.538 3.462 7 O -0.528 6.528 8 C -0.023 4.023 9 C -0.514 4.514 10 H 0.092 0.908 11 C 0.069 3.931 12 N -0.896 5.896 13 Si 0.874 3.126 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.267 1.267 17 C 0.073 3.927 18 C 0.095 3.905 19 H 0.074 0.926 20 O -0.557 6.557 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.264 0.736 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 3.793 -12.114 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.013 4.013 5 N -0.372 5.372 6 C 0.330 3.670 7 O -0.402 6.402 8 C -0.063 4.063 9 C -0.552 4.552 10 H 0.110 0.890 11 C -0.132 4.132 12 N -0.535 5.535 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.051 4.051 18 C 0.035 3.965 19 H 0.092 0.908 20 O -0.362 6.362 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.803 4.179 -10.919 18.864 hybrid contribution 0.715 -0.616 -1.412 1.698 sum -14.088 3.563 -12.331 19.058 Atomic orbital electron populations 1.21687 0.93501 1.02124 1.02328 1.22387 0.96275 1.00308 0.92790 0.88943 1.22192 0.84146 0.97855 0.97156 1.48677 1.12457 1.70113 1.05965 1.21215 0.84725 0.74921 0.86145 1.90594 1.82572 1.51968 1.15065 1.19659 0.90127 0.97455 0.99012 1.21014 0.94923 1.45035 0.94248 0.88958 1.24969 0.96372 0.94949 0.96956 1.69895 1.06034 1.46142 1.31421 0.86885 0.78818 0.78301 0.85862 1.20081 1.21032 1.19195 1.22651 0.98437 1.01761 0.82251 1.22930 0.94532 0.92861 0.86127 0.90830 1.86536 1.88115 1.39820 1.21749 0.92396 0.92031 0.91912 0.90212 0.91787 0.93730 0.94116 0.92564 0.91304 0.90607 0.77287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.31 37.16 0.35 -0.90 16 2 C -0.10 -1.14 3.36 -88.47 -0.30 -1.44 16 3 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.11 1.60 6.38 -2.53 -0.02 1.58 16 5 N -0.63 -11.28 3.33 -170.52 -0.57 -11.85 16 6 C 0.54 12.52 7.84 -10.99 -0.09 12.43 16 7 O -0.53 -14.31 15.72 5.56 0.09 -14.22 16 8 C -0.02 -0.56 3.72 -29.03 -0.11 -0.67 16 9 C -0.51 -15.39 9.48 -34.44 -0.33 -15.71 16 10 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 13 Si 0.87 21.07 27.47 -169.99 -4.67 16.41 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 17 C 0.07 1.01 6.26 -3.06 -0.02 0.99 16 18 C 0.10 1.03 3.80 -24.90 -0.09 0.94 16 19 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 20 O -0.56 -5.69 13.39 -35.23 -0.47 -6.16 16 21 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 25 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 26 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 27 H 0.04 0.94 7.57 -51.93 -0.39 0.55 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 31 H 0.38 2.23 9.12 45.56 0.42 2.64 16 LS Contribution 262.17 15.07 3.95 3.95 Total: -1.00 -35.32 262.17 -5.26 -40.58 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -3.66 Total: -0.52 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.70 Total: -0.84 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.21 Total: -39.19 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.38 Total: -20.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -35.32 -5.26 -40.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.432 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds