Wall clock time and date at job start Sun Mar 29 2020 21:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.91132 * 2 1 4 4 C 1.54907 * 111.00367 * 123.89761 * 2 1 3 5 5 N 1.47430 * 104.83058 * 155.08461 * 4 2 1 6 6 C 1.34773 * 125.64458 * 155.91053 * 5 4 2 7 7 O 1.21282 * 120.00156 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99678 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47093 * 179.97438 * 8 6 5 10 10 H 1.08000 * 120.00020 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00179 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99866 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47127 * 89.99535 * 13 11 9 15 15 H 1.48503 * 109.47244 * 209.99552 * 13 11 9 16 16 H 1.48495 * 109.47122 * 329.99750 * 13 11 9 17 17 C 1.47014 * 108.70471 * 335.87277 * 5 4 2 18 18 C 1.54331 * 107.26998 * 1.05754 * 17 5 4 19 19 H 1.09000 * 110.87198 * 263.75468 * 18 17 5 20 20 O 1.42903 * 110.71518 * 140.55636 * 18 17 5 21 21 H 1.09000 * 109.46980 * 183.89821 * 1 2 3 22 22 H 1.08992 * 109.47208 * 303.90503 * 1 2 3 23 23 H 1.08998 * 109.46948 * 63.90766 * 1 2 3 24 24 H 1.08997 * 110.36868 * 273.92606 * 4 2 1 25 25 H 1.09001 * 110.36760 * 36.25145 * 4 2 1 26 26 H 1.08999 * 109.47120 * 299.99418 * 8 6 5 27 27 H 1.08995 * 109.47095 * 59.99858 * 8 6 5 28 28 H 0.97008 * 119.99969 * 180.02562 * 12 11 9 29 29 H 1.08999 * 109.88743 * 241.64099 * 17 5 4 30 30 H 1.08997 * 109.88268 * 120.47140 * 17 5 4 31 31 H 0.96700 * 114.00311 * 66.48015 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 1.2004 5 7 3.4272 -1.2430 0.7734 6 6 4.4476 -1.5615 1.5941 7 8 4.3008 -1.4997 2.7964 8 6 5.7715 -1.9932 1.0178 9 6 6.7346 -2.2892 2.1385 10 1 6.4195 -2.1764 3.1653 11 6 8.0177 -2.7051 1.8530 12 7 8.8584 -2.9629 2.8309 13 14 8.5626 -2.9009 0.0770 14 1 9.1354 -1.6199 -0.4092 15 1 9.5917 -3.9680 -0.0104 16 1 7.3940 -3.2704 -0.7615 17 6 3.4675 -1.2741 -0.6959 18 6 2.0862 -0.8080 -1.2021 19 1 1.4452 -1.6615 -1.4229 20 8 2.2252 0.0284 -2.3525 21 1 -0.3633 -1.0253 0.0699 22 1 -0.3633 0.5732 0.8529 23 1 -0.3633 0.4520 -0.9229 24 1 2.1559 -0.1719 2.0837 25 1 1.4519 -1.6703 1.4025 26 1 5.6299 -2.8895 0.4139 27 1 6.1741 -1.1949 0.3946 28 1 9.7613 -3.2552 2.6300 29 1 3.6651 -2.2893 -1.0399 30 1 4.2426 -0.5997 -1.0598 31 1 2.5696 -0.4288 -3.1319 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143193751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:31 Heat of formation + Delta-G solvation = -117.917818 kcal Electronic energy + Delta-G solvation = -14382.061410 eV Core-core repulsion = 11855.083427 eV Total energy + Delta-G solvation = -2526.977983 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.11854 -39.12438 -36.45892 -35.07755 -33.82143 -31.67049 -29.61129 -27.67375 -25.08799 -23.66359 -21.38609 -20.29218 -19.13300 -18.44100 -17.47475 -17.21458 -16.59557 -16.02806 -15.56763 -15.09544 -14.65075 -14.24481 -14.16902 -14.04776 -13.52332 -13.37087 -12.93891 -12.83989 -12.54183 -12.40804 -12.10348 -11.85737 -11.57904 -11.38870 -11.15101 -10.82140 -10.61693 -9.66944 -8.29502 -6.39025 1.36348 1.41178 1.51615 1.74171 2.01101 2.35706 3.02997 3.23702 3.39381 3.52947 4.02609 4.12361 4.20838 4.36201 4.50471 4.61178 4.65798 4.69510 4.81526 4.88202 4.99505 5.03579 5.23185 5.29505 5.38378 5.49372 6.20844 6.48870 6.78070 6.90097 7.20299 7.34782 8.88188 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044671 B = 0.007968 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.659165 B = 3513.143074 C = 4068.083499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.102 3.898 5 N -0.627 5.627 6 C 0.531 3.469 7 O -0.586 6.586 8 C -0.017 4.017 9 C -0.539 4.539 10 H 0.027 0.973 11 C 0.002 3.998 12 N -0.952 5.952 13 Si 0.962 3.038 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.229 1.229 17 C 0.061 3.939 18 C 0.110 3.890 19 H 0.102 0.898 20 O -0.566 6.566 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.270 0.730 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 3.649 -16.212 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.020 4.020 5 N -0.363 5.363 6 C 0.323 3.677 7 O -0.466 6.466 8 C -0.056 4.056 9 C -0.577 4.577 10 H 0.046 0.954 11 C -0.194 4.194 12 N -0.592 5.592 13 Si 0.782 3.218 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.152 1.152 17 C -0.062 4.062 18 C 0.051 3.949 19 H 0.120 0.880 20 O -0.374 6.374 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -16.198 4.051 -15.087 22.503 hybrid contribution 1.090 -0.532 -0.067 1.215 sum -15.108 3.518 -15.154 21.686 Atomic orbital electron populations 1.21660 0.91127 1.03178 1.03046 1.22342 0.98049 0.99066 0.91729 0.90247 1.22442 0.82792 0.98627 0.98117 1.48542 1.12300 1.67732 1.07764 1.21000 0.85754 0.75213 0.85772 1.90569 1.83660 1.54851 1.17506 1.19522 0.89792 0.98980 0.97353 1.21172 0.97039 1.46193 0.93339 0.95439 1.26163 0.95858 0.93764 1.03645 1.70093 1.06768 1.47221 1.35079 0.85528 0.79417 0.78820 0.78023 1.18637 1.20726 1.15169 1.23067 1.00744 1.03179 0.79221 1.22821 0.92777 0.93341 0.86005 0.87991 1.86506 1.88208 1.40411 1.22297 0.91129 0.91722 0.90876 0.92296 0.90284 0.91339 0.91965 0.92165 0.89415 0.90558 0.74857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.31 71.98 0.67 -1.26 16 2 C -0.09 -1.90 3.36 -9.40 -0.03 -1.93 16 3 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.10 2.88 6.38 86.85 0.55 3.43 16 5 N -0.63 -21.59 3.33 -811.80 -2.70 -24.29 16 6 C 0.53 25.06 7.84 87.66 0.69 25.74 16 7 O -0.59 -33.62 15.72 -3.03 -0.05 -33.67 16 8 C -0.02 -0.81 3.72 29.10 0.11 -0.71 16 9 C -0.54 -33.51 9.48 25.60 0.24 -33.26 16 10 H 0.03 2.00 7.00 -2.91 -0.02 1.98 16 11 C 0.00 0.14 5.47 84.65 0.46 0.60 16 12 N -0.95 -61.84 13.96 21.45 0.30 -61.54 16 13 Si 0.96 42.45 27.47 68.60 1.88 44.34 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.23 -8.66 6.54 99.48 0.65 -8.01 16 17 C 0.06 1.46 6.26 86.73 0.54 2.00 16 18 C 0.11 1.93 3.80 31.78 0.12 2.05 16 19 H 0.10 1.30 8.04 -2.39 -0.02 1.28 16 20 O -0.57 -9.07 13.39 -148.98 -1.99 -11.06 16 21 H 0.07 0.87 8.07 -2.39 -0.02 0.85 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 25 H 0.08 2.00 7.98 -2.39 -0.02 1.98 16 26 H 0.07 2.96 7.20 -2.39 -0.02 2.95 16 27 H 0.06 2.73 7.57 -2.39 -0.02 2.71 16 28 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.85 8.06 -2.39 -0.02 1.83 16 31 H 0.40 2.75 9.12 -74.06 -0.68 2.08 16 Total: -1.00 -82.28 262.17 1.19 -81.09 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.39 Total: 8.47 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 3.36 Total: -3.34 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -2.40 Total: -85.83 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -2.04 Total: -44.72 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.34 kcal Total: -82.28 1.19 -81.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.827 kcal (2) G-P(sol) polarization free energy of solvation -82.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds