Wall clock time and date at job start Sun Mar 29 2020 22:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.53000 * 109.46992 * 90.00137 * 3 2 1 5 5 C 1.54032 * 113.81686 * 273.50622 * 4 3 2 6 6 O 1.44450 * 85.42600 * 223.23332 * 5 4 3 7 7 C 1.44178 * 93.37577 * 24.09165 * 6 5 4 8 8 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 9 9 O 1.21281 * 120.00220 * 179.72597 * 8 2 1 10 10 C 1.50706 * 120.00080 * 359.72107 * 8 2 1 11 11 C 1.50690 * 109.47185 * 180.02562 * 10 8 2 12 12 H 1.08002 * 120.00210 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99820 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00036 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00010 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47138 * 89.99682 * 15 13 11 17 17 H 1.48493 * 109.47149 * 209.99845 * 15 13 11 18 18 H 1.48499 * 109.46928 * 329.99853 * 15 13 11 19 19 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 20 20 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 21 21 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 22 22 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 23 23 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 24 24 H 1.09005 * 112.99987 * 45.32896 * 4 3 2 25 25 H 1.09000 * 113.86588 * 337.34702 * 5 4 3 26 26 H 1.09003 * 113.86384 * 109.05124 * 5 4 3 27 27 H 1.09008 * 113.86093 * 221.76660 * 7 6 5 28 28 H 1.08990 * 113.98952 * 90.07516 * 7 6 5 29 29 H 1.09004 * 109.46762 * 300.00389 * 10 8 2 30 30 H 1.08998 * 109.46924 * 59.99727 * 10 8 2 31 31 H 0.97005 * 119.99861 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 1.2975 2.5228 2.0577 6 8 2.3340 3.3828 2.5798 7 6 3.2801 3.0042 1.5598 8 6 2.1389 -1.1671 -0.0057 9 8 3.3517 -1.1672 -0.0107 10 6 1.3854 -2.4723 -0.0057 11 6 2.3646 -3.6177 -0.0121 12 1 3.4264 -3.4203 -0.0153 13 6 1.9050 -4.9176 -0.0137 14 7 0.6120 -5.1579 -0.0093 15 14 3.1189 -6.3375 -0.0208 16 1 3.4449 -6.7170 1.3773 17 1 2.5168 -7.4999 -0.7217 18 1 4.3600 -5.9241 -0.7237 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5138 22 1 3.1499 1.1384 -0.5138 23 1 1.6084 2.0285 -0.5138 24 1 2.8089 0.9006 2.0792 25 1 0.6550 3.0040 1.3203 26 1 0.7403 1.9856 2.8253 27 1 4.2922 2.8479 1.9333 28 1 3.2464 3.6316 0.6692 29 1 0.7624 -2.5322 0.8867 30 1 0.7550 -2.5278 -0.8932 31 1 0.2887 -6.0725 -0.0109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:22 Heat of formation + Delta-G solvation = -52.164212 kcal Electronic energy + Delta-G solvation = -14297.253744 eV Core-core repulsion = 11773.127052 eV Total energy + Delta-G solvation = -2524.126692 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42480 -38.71927 -34.95566 -32.99270 -31.16069 -28.76454 -26.78180 -26.42746 -24.99749 -22.88365 -20.24187 -18.53574 -16.62692 -16.52032 -16.00536 -15.78895 -15.54792 -15.02184 -14.37524 -14.18054 -12.90078 -12.78097 -12.62634 -12.44988 -12.14293 -11.93389 -11.70427 -11.28565 -10.92856 -10.78962 -10.65054 -10.52123 -9.96042 -9.72920 -9.24185 -8.64674 -8.44522 -8.11679 -6.07008 -4.06492 3.34190 3.39391 3.45183 3.54714 3.63935 3.71093 4.34934 4.47568 4.85580 5.13852 5.17726 5.24488 5.31100 5.45059 5.50487 5.57850 5.74373 5.89544 5.92875 6.03900 6.08476 6.22646 6.24573 7.01663 7.18451 7.31257 7.91800 7.96114 8.35056 9.04076 9.17222 9.58686 11.05361 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053713 B = 0.006653 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.168774 B = 4207.339451 C = 4448.641118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.634 5.634 3 C 0.119 3.881 4 C -0.167 4.167 5 C 0.039 3.961 6 O -0.386 6.386 7 C 0.042 3.958 8 C 0.514 3.486 9 O -0.543 6.543 10 C 0.008 3.992 11 C -0.509 4.509 12 H 0.074 0.926 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.901 3.099 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.272 1.272 19 H 0.050 0.950 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 13.655 0.838 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.370 5.370 3 C -0.005 4.005 4 C -0.187 4.187 5 C -0.038 4.038 6 O -0.305 6.305 7 C -0.036 4.036 8 C 0.306 3.694 9 O -0.419 6.419 10 C -0.031 4.031 11 C -0.548 4.548 12 H 0.093 0.907 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.729 3.271 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.197 1.197 19 H 0.068 0.932 20 H 0.098 0.902 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.089 0.911 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.181 13.660 1.047 13.751 hybrid contribution 0.341 -0.894 -0.128 0.965 sum -0.840 12.766 0.919 12.827 Atomic orbital electron populations 1.21701 0.80018 1.02787 1.01399 1.48162 1.06690 1.05718 1.76458 1.21350 0.98317 0.86079 0.94774 1.24758 0.95974 0.98691 0.99291 1.24091 0.91979 0.89980 0.97727 1.89689 1.25491 1.68056 1.47288 1.23922 0.95008 0.93298 0.91358 1.22085 0.88543 0.85702 0.73035 1.90527 1.14949 1.87315 1.49116 1.19252 0.96761 0.87858 0.99259 1.21191 0.93939 0.89540 1.50099 0.90743 1.25004 0.95346 0.99035 0.95187 1.69955 1.12528 1.20421 1.51183 0.86434 0.81237 0.81277 0.78182 1.20602 1.21250 1.19675 0.93185 0.90152 0.92337 0.89763 0.91106 0.87549 0.90263 0.89247 0.89105 0.90145 0.93480 0.93482 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.24 59.85 0.61 1.76 16 2 N -0.63 -10.87 2.87 -181.57 -0.52 -11.39 16 3 C 0.12 1.67 5.26 -4.04 -0.02 1.65 16 4 C -0.17 -2.23 4.20 -89.54 -0.38 -2.60 16 5 C 0.04 0.45 8.33 37.64 0.31 0.77 16 6 O -0.39 -5.30 12.46 -35.23 -0.44 -5.74 16 7 C 0.04 0.48 8.79 37.64 0.33 0.81 16 8 C 0.51 11.69 7.67 -10.98 -0.08 11.61 16 9 O -0.54 -14.04 15.03 5.56 0.08 -13.96 16 10 C 0.01 0.20 4.01 -29.04 -0.12 0.08 16 11 C -0.51 -14.80 8.92 -34.44 -0.31 -15.11 16 12 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 15 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.08 1.19 6.45 -51.93 -0.33 0.86 16 21 H 0.06 0.61 7.60 -51.93 -0.39 0.22 16 22 H 0.08 1.32 7.41 -51.93 -0.38 0.94 16 23 H 0.07 0.78 7.81 -51.93 -0.41 0.38 16 24 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 25 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.05 1.20 7.41 -51.93 -0.38 0.82 16 30 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 265.81 15.07 4.01 4.01 Total: -1.00 -32.87 265.81 -5.24 -38.11 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.34 Total: -3.02 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 0.25 Total: 0.44 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.21 Total: -36.95 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.36 Total: -19.70 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.87 -5.24 -38.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.056 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds