Wall clock time and date at job start Sun Mar 29 2020 22:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.53000 * 109.46992 * 90.00137 * 3 2 1 5 5 C 1.54032 * 113.81686 * 273.50622 * 4 3 2 6 6 O 1.44450 * 85.42600 * 223.23332 * 5 4 3 7 7 C 1.44178 * 93.37577 * 24.09165 * 6 5 4 8 8 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 9 9 O 1.21281 * 120.00220 * 179.72597 * 8 2 1 10 10 C 1.50706 * 120.00080 * 359.72107 * 8 2 1 11 11 C 1.50690 * 109.47185 * 180.02562 * 10 8 2 12 12 H 1.08002 * 120.00210 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99820 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00036 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00010 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47138 * 89.99682 * 15 13 11 17 17 H 1.48493 * 109.47149 * 209.99845 * 15 13 11 18 18 H 1.48499 * 109.46928 * 329.99853 * 15 13 11 19 19 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 20 20 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 21 21 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 22 22 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 23 23 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 24 24 H 1.09005 * 112.99987 * 45.32896 * 4 3 2 25 25 H 1.09000 * 113.86588 * 337.34702 * 5 4 3 26 26 H 1.09003 * 113.86384 * 109.05124 * 5 4 3 27 27 H 1.09008 * 113.86093 * 221.76660 * 7 6 5 28 28 H 1.08990 * 113.98952 * 90.07516 * 7 6 5 29 29 H 1.09004 * 109.46762 * 300.00389 * 10 8 2 30 30 H 1.08998 * 109.46924 * 59.99727 * 10 8 2 31 31 H 0.97005 * 119.99861 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 1.2975 2.5228 2.0577 6 8 2.3340 3.3828 2.5798 7 6 3.2801 3.0042 1.5598 8 6 2.1389 -1.1671 -0.0057 9 8 3.3517 -1.1672 -0.0107 10 6 1.3854 -2.4723 -0.0057 11 6 2.3646 -3.6177 -0.0121 12 1 3.4264 -3.4203 -0.0153 13 6 1.9050 -4.9176 -0.0137 14 7 0.6120 -5.1579 -0.0093 15 14 3.1189 -6.3375 -0.0208 16 1 3.4449 -6.7170 1.3773 17 1 2.5168 -7.4999 -0.7217 18 1 4.3600 -5.9241 -0.7237 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5138 22 1 3.1499 1.1384 -0.5138 23 1 1.6084 2.0285 -0.5138 24 1 2.8089 0.9006 2.0792 25 1 0.6550 3.0040 1.3203 26 1 0.7403 1.9856 2.8253 27 1 4.2922 2.8479 1.9333 28 1 3.2464 3.6316 0.6692 29 1 0.7624 -2.5322 0.8867 30 1 0.7550 -2.5278 -0.8932 31 1 0.2887 -6.0725 -0.0109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:21 Heat of formation + Delta-G solvation = -75.584067 kcal Electronic energy + Delta-G solvation = -14298.269305 eV Core-core repulsion = 11773.127052 eV Total energy + Delta-G solvation = -2525.142253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.49050 -40.30843 -36.47657 -35.14606 -32.46865 -30.63983 -27.90704 -27.39214 -26.64631 -24.64204 -21.27874 -20.09776 -18.62073 -17.66427 -17.46074 -17.09119 -16.95306 -16.42696 -16.14031 -15.64186 -14.49580 -14.22725 -14.01438 -13.73406 -13.56158 -13.23230 -13.13570 -12.89510 -12.70923 -12.59226 -12.07227 -11.95189 -11.60865 -11.39514 -10.68005 -10.63529 -10.45513 -9.51644 -8.26534 -6.33820 1.39036 1.39689 1.52370 1.85683 2.17874 2.43488 2.73693 3.08536 3.35665 3.82225 4.04750 4.22014 4.34114 4.36850 4.41667 4.60716 4.61867 4.76331 4.84164 4.95270 5.01047 5.06959 5.16964 5.20252 5.26869 5.66002 5.79203 6.03671 6.53049 6.79624 7.32692 7.46614 8.85514 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053713 B = 0.006653 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.168774 B = 4207.339451 C = 4448.641118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.622 5.622 3 C 0.118 3.882 4 C -0.174 4.174 5 C 0.047 3.953 6 O -0.410 6.410 7 C 0.048 3.952 8 C 0.513 3.487 9 O -0.585 6.585 10 C 0.014 3.986 11 C -0.540 4.540 12 H 0.052 0.948 13 C 0.011 3.989 14 N -0.923 5.923 15 Si 0.963 3.037 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.275 1.275 19 H 0.066 0.934 20 H 0.063 0.937 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 14.883 0.498 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.356 5.356 3 C -0.004 4.004 4 C -0.194 4.194 5 C -0.029 4.029 6 O -0.330 6.330 7 C -0.029 4.029 8 C 0.304 3.696 9 O -0.465 6.465 10 C -0.026 4.026 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.788 3.212 16 H -0.197 1.197 17 H -0.197 1.197 18 H -0.200 1.200 19 H 0.084 0.916 20 H 0.082 0.918 21 H 0.119 0.881 22 H 0.083 0.917 23 H 0.134 0.866 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.994 14.928 0.710 15.077 hybrid contribution 0.518 -1.216 -0.019 1.322 sum -1.476 13.712 0.691 13.809 Atomic orbital electron populations 1.21970 0.77517 1.04117 1.02876 1.48060 1.08285 1.05216 1.74031 1.21608 0.97970 0.85191 0.95642 1.24670 0.98104 0.98552 0.98061 1.24259 0.91408 0.89107 0.98120 1.89672 1.26518 1.68395 1.48407 1.24066 0.94589 0.92258 0.91939 1.21551 0.87826 0.86743 0.73527 1.90497 1.16413 1.88105 1.51526 1.19045 0.96046 0.89018 0.98457 1.21407 0.93648 0.91500 1.51284 0.92926 1.25774 0.97202 1.01330 0.94437 1.70022 1.13813 1.21355 1.51099 0.85479 0.78861 0.78326 0.78580 1.19711 1.19686 1.19980 0.91566 0.91845 0.88067 0.91681 0.86585 0.91301 0.86994 0.89160 0.89153 0.87161 0.94187 0.94172 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.92 10.24 127.77 1.31 3.23 16 2 N -0.62 -20.64 2.87 -846.74 -2.43 -23.08 16 3 C 0.12 3.08 5.26 86.38 0.45 3.53 16 4 C -0.17 -4.38 4.20 -10.10 -0.04 -4.43 16 5 C 0.05 0.95 8.33 72.29 0.60 1.56 16 6 O -0.41 -10.33 12.46 -148.98 -1.86 -12.19 16 7 C 0.05 1.02 8.79 72.30 0.64 1.65 16 8 C 0.51 23.78 7.67 87.66 0.67 24.46 16 9 O -0.59 -31.35 15.03 -3.03 -0.05 -31.40 16 10 C 0.01 0.71 4.01 29.10 0.12 0.83 16 11 C -0.54 -32.30 8.92 25.60 0.23 -32.08 16 12 H 0.05 3.32 6.75 -2.91 -0.02 3.30 16 13 C 0.01 0.65 5.46 84.66 0.46 1.12 16 14 N -0.92 -54.06 13.29 21.45 0.28 -53.77 16 15 Si 0.96 45.62 29.54 68.60 2.03 47.64 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 19 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.06 1.82 6.45 -2.39 -0.02 1.81 16 21 H 0.10 1.67 7.60 -2.38 -0.02 1.66 16 22 H 0.06 1.98 7.41 -2.39 -0.02 1.96 16 23 H 0.12 2.02 7.81 -2.39 -0.02 2.00 16 24 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 25 H 0.11 1.55 7.92 -2.39 -0.02 1.53 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.11 1.68 8.10 -2.39 -0.02 1.66 16 29 H 0.04 2.11 7.41 -2.39 -0.02 2.09 16 30 H 0.04 2.11 8.10 -2.39 -0.02 2.09 16 31 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -72.67 265.81 3.52 -69.15 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.11 Total: 3.78 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 4.44 Total: -0.13 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.15 Total: -76.85 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -1.90 Total: -43.59 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.67 3.52 -69.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.435 kcal (2) G-P(sol) polarization free energy of solvation -72.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds