Wall clock time and date at job start Sun Mar 29 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37104 * 120.00110 * 2 1 4 4 H 1.07992 * 119.99919 * 142.74430 * 3 2 1 5 5 C 1.38952 * 119.99837 * 322.74602 * 3 2 1 6 6 N 1.31413 * 120.00091 * 158.47217 * 5 3 2 7 7 Si 1.86807 * 119.99825 * 338.47242 * 5 3 2 8 8 H 1.48498 * 109.47126 * 95.73522 * 7 5 3 9 9 H 1.48497 * 109.46828 * 215.73113 * 7 5 3 10 10 H 1.48494 * 109.46912 * 335.73281 * 7 5 3 11 11 C 1.34778 * 120.00312 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00414 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99805 * 0.02562 * 11 2 1 14 14 H 1.09005 * 110.59423 * 42.99803 * 13 11 2 15 15 C 1.54934 * 110.66585 * 279.99682 * 13 11 2 16 16 C 1.54601 * 102.92283 * 203.98108 * 15 13 11 17 17 H 1.08995 * 110.39032 * 140.91578 * 16 15 13 18 18 N 1.46899 * 110.31084 * 263.04134 * 16 15 13 19 19 C 1.53998 * 105.13488 * 21.95764 * 16 15 13 20 20 N 1.47898 * 107.22739 * 1.12654 * 19 16 15 21 21 H 1.08998 * 109.47555 * 265.07066 * 1 2 3 22 22 H 1.08999 * 109.47341 * 25.07462 * 1 2 3 23 23 H 1.09009 * 109.47201 * 145.07170 * 1 2 3 24 24 H 0.97002 * 120.00088 * 179.97438 * 6 5 3 25 25 H 1.09006 * 110.72432 * 85.62770 * 15 13 11 26 26 H 1.08997 * 110.88074 * 322.41641 * 15 13 11 27 27 H 1.00896 * 110.99970 * 177.16872 * 18 16 15 28 28 H 1.00893 * 111.00073 * 301.12255 * 18 16 15 29 29 H 1.09003 * 109.91439 * 120.57934 * 19 16 15 30 30 H 1.08995 * 109.91370 * 241.66999 * 19 16 15 31 31 H 1.00897 * 111.00046 * 95.28221 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0651 1.2827 0.5662 5 6 1.6683 2.2679 -0.7285 6 7 2.0447 3.4887 -0.4201 7 14 0.4851 1.9853 -2.1461 8 1 -0.9102 2.1588 -1.6684 9 1 0.7639 2.9653 -3.2264 10 1 0.6611 0.6072 -2.6704 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.5477 -2.4314 -0.6957 15 6 0.8935 -2.8197 1.4280 16 6 0.7352 -4.3566 1.3747 17 1 1.0671 -4.8053 2.3110 18 7 -0.6634 -4.7161 1.1056 19 6 1.6376 -4.8137 0.2135 20 7 2.2891 -3.6054 -0.3367 21 1 -0.3634 -0.0883 1.0238 22 1 -0.3634 0.9308 -0.4355 23 1 -0.3634 -0.8426 -0.5884 24 1 1.7084 4.2430 -0.9289 25 1 -0.0636 -2.3403 1.6336 26 1 1.6345 -2.5339 2.1746 27 1 -0.7703 -5.7160 1.0229 28 1 -1.2754 -4.3448 1.8166 29 1 2.3930 -5.5081 0.5814 30 1 1.0355 -5.2947 -0.5573 31 1 3.2032 -3.4710 0.0688 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:08 Heat of formation + Delta-G solvation = -40.428758 kcal Electronic energy + Delta-G solvation = -14818.978901 eV Core-core repulsion = 12327.653847 eV Total energy + Delta-G solvation = -2491.325054 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.11335 -38.93790 -36.76942 -34.22871 -33.95595 -30.70105 -28.43737 -28.07125 -26.77990 -23.61652 -21.19038 -20.59420 -19.14143 -18.40838 -17.66038 -16.78192 -16.45979 -16.09209 -15.86564 -15.13051 -14.92888 -14.63823 -14.31187 -14.19212 -13.74233 -13.43829 -12.98349 -12.69542 -12.50359 -12.32491 -12.23852 -12.02499 -11.82525 -11.07168 -10.39534 -9.79419 -9.72854 -9.45428 -8.54581 -6.17870 1.18530 1.32111 1.45487 1.85205 2.16203 2.61727 2.88293 3.32062 3.56256 3.59323 3.88338 3.90948 4.22214 4.34779 4.37065 4.50979 4.58480 4.74278 4.75299 4.90871 4.99620 5.04143 5.47852 5.70239 5.99289 6.23758 6.36603 6.52790 6.67511 6.89104 7.24946 7.80850 8.62669 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047156 B = 0.009273 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.626189 B = 3018.757173 C = 3226.210001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.477 5.477 3 C -0.341 4.341 4 H 0.044 0.956 5 C 0.013 3.987 6 N -0.909 5.909 7 Si 0.953 3.047 8 H -0.235 1.235 9 H -0.288 1.288 10 H -0.263 1.263 11 C 0.458 3.542 12 O -0.613 6.613 13 C 0.075 3.925 14 H 0.114 0.886 15 C -0.133 4.133 16 C 0.072 3.928 17 H 0.058 0.942 18 N -0.841 5.841 19 C 0.048 3.952 20 N -0.670 5.670 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.281 0.719 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.354 0.646 28 H 0.351 0.649 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 -15.717 2.675 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.199 5.199 3 C -0.469 4.469 4 H 0.062 0.938 5 C -0.190 4.190 6 N -0.546 5.546 7 Si 0.776 3.224 8 H -0.160 1.160 9 H -0.215 1.215 10 H -0.187 1.187 11 C 0.248 3.752 12 O -0.497 6.497 13 C -0.038 4.038 14 H 0.132 0.868 15 C -0.173 4.173 16 C -0.041 4.041 17 H 0.075 0.925 18 N -0.374 5.374 19 C -0.082 4.082 20 N -0.300 5.300 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.131 -15.163 1.276 18.281 hybrid contribution 0.381 0.303 1.391 1.474 sum -9.750 -14.860 2.667 17.972 Atomic orbital electron populations 1.22266 0.80108 1.02654 1.03382 1.43736 1.06042 1.04450 1.65659 1.18685 1.09581 0.88028 1.30587 0.93776 1.26172 0.99838 0.93822 0.99147 1.69862 1.45938 0.99230 1.39599 0.85777 0.79476 0.78743 0.78385 1.15982 1.21480 1.18699 1.21127 0.87913 0.86308 0.79873 1.90498 1.16341 1.87705 1.55165 1.22564 0.95329 0.87834 0.98072 0.86816 1.23037 1.02486 0.96802 0.94991 1.22448 0.90606 0.93429 0.97603 0.92458 1.58681 1.04679 1.19140 1.54948 1.22973 0.97051 0.92398 0.95789 1.62819 1.05410 1.01812 1.59957 0.90385 0.92427 0.89036 0.90891 0.88444 0.92494 0.83178 0.83540 0.89942 0.89245 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.17 8.45 127.77 1.08 3.25 16 2 N -0.48 -23.75 2.58 -658.90 -1.70 -25.45 16 3 C -0.34 -20.60 9.37 84.04 0.79 -19.82 16 4 H 0.04 3.11 7.90 -2.91 -0.02 3.09 16 5 C 0.01 0.72 5.29 84.93 0.45 1.17 16 6 N -0.91 -54.81 13.96 21.66 0.30 -54.51 16 7 Si 0.95 42.77 24.96 68.60 1.71 44.49 16 8 H -0.24 -9.05 6.70 99.48 0.67 -8.38 16 9 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 11 C 0.46 22.14 6.96 87.66 0.61 22.75 16 12 O -0.61 -35.23 15.73 -3.06 -0.05 -35.28 16 13 C 0.07 2.63 2.84 44.46 0.13 2.76 16 14 H 0.11 3.78 6.57 -2.38 -0.02 3.77 16 15 C -0.13 -3.64 5.98 31.80 0.19 -3.45 16 16 C 0.07 1.47 4.12 45.80 0.19 1.65 16 17 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 18 N -0.84 -13.22 9.13 -165.03 -1.51 -14.72 16 19 C 0.05 1.10 7.30 86.45 0.63 1.73 16 20 N -0.67 -22.24 7.27 -483.52 -3.52 -25.76 16 21 H 0.08 2.49 7.96 -2.39 -0.02 2.48 16 22 H 0.06 2.26 3.43 -2.39 -0.01 2.25 16 23 H 0.09 2.81 6.24 -2.38 -0.01 2.79 16 24 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.10 2.35 7.65 -2.38 -0.02 2.33 16 26 H 0.06 1.75 8.05 -2.39 -0.02 1.73 16 27 H 0.35 4.08 9.06 -89.70 -0.81 3.26 16 28 H 0.35 4.51 8.99 -89.70 -0.81 3.70 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.97 7.92 -2.39 -0.02 1.95 16 31 H 0.34 12.38 7.79 -89.70 -0.70 11.68 16 Total: -1.00 -74.60 251.01 -1.88 -76.48 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -1.18 Total: 24.71 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 4.06 Total: 10.05 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.42 Total: -120.45 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.05 Total: -35.28 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.71 Total: 44.49 kcal Total: -74.60 -1.88 -76.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.050 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds