Wall clock time and date at job start Sun Mar 29 2020 22:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37094 * 120.00133 * 2 1 4 4 H 1.07998 * 120.00377 * 188.91879 * 3 2 1 5 5 C 1.38953 * 120.00197 * 8.91242 * 3 2 1 6 6 N 1.31416 * 119.99704 * 9.67241 * 5 3 2 7 7 Si 1.86792 * 120.00330 * 189.67347 * 5 3 2 8 8 H 1.48503 * 109.47182 * 60.00321 * 7 5 3 9 9 H 1.48506 * 109.47541 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47333 * 300.00048 * 7 5 3 11 11 C 1.34776 * 120.00061 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00274 * 186.04555 * 11 2 1 13 13 C 1.50703 * 119.99774 * 6.04549 * 11 2 1 14 14 N 1.46895 * 110.28637 * 44.78778 * 13 11 2 15 15 C 1.54261 * 110.32511 * 282.65266 * 13 11 2 16 16 C 1.54375 * 105.06410 * 241.10538 * 15 13 11 17 17 N 1.48562 * 104.59198 * 23.85664 * 16 15 13 18 18 C 1.48566 * 104.22197 * 320.51491 * 17 16 15 19 19 H 1.08993 * 109.46799 * 174.96966 * 1 2 3 20 20 H 1.09000 * 109.47105 * 294.97063 * 1 2 3 21 21 H 1.08996 * 109.46598 * 54.97166 * 1 2 3 22 22 H 0.96999 * 120.00244 * 180.02562 * 6 5 3 23 23 H 1.00897 * 111.00268 * 64.07924 * 14 13 11 24 24 H 1.00904 * 110.99767 * 188.03682 * 14 13 11 25 25 H 1.09000 * 110.32317 * 0.02562 * 15 13 11 26 26 H 1.08996 * 110.31749 * 122.20735 * 15 13 11 27 27 H 1.08993 * 110.41065 * 142.63351 * 16 15 13 28 28 H 1.09003 * 110.41150 * 264.96035 * 16 15 13 29 29 H 1.00907 * 110.99730 * 200.96118 * 17 16 15 30 30 H 1.09000 * 110.41086 * 280.70433 * 18 17 16 31 31 H 1.08998 * 110.40831 * 158.26382 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2207 1.1930 -0.1450 5 6 1.4684 2.3834 0.1864 6 7 0.2057 2.3699 0.5504 7 14 2.3461 4.0105 -0.0803 8 1 2.8297 4.0882 -1.4823 9 1 1.4051 5.1293 0.1807 10 1 3.5013 4.1079 0.8479 11 6 2.1389 -1.1672 0.0005 12 8 3.3468 -1.1701 0.1111 13 6 1.3917 -2.4687 -0.1364 14 7 0.3832 -2.3676 -1.1996 15 6 0.7236 -2.8463 1.2018 16 6 1.3582 -4.1960 1.6003 17 7 2.6659 -4.2173 0.8956 18 6 2.3738 -3.6221 -0.4339 19 1 -0.3633 -1.0237 -0.0901 20 1 -0.3633 0.4338 0.9316 21 1 -0.3632 0.5899 -0.8415 22 1 -0.2706 3.2048 0.6802 23 1 0.8183 -2.2210 -2.0980 24 1 -0.2101 -3.1837 -1.2140 25 1 0.9358 -2.0900 1.9576 26 1 -0.3525 -2.9583 1.0693 27 1 1.5069 -4.2424 2.6790 28 1 0.7316 -5.0236 1.2678 29 1 3.0105 -5.1610 0.8014 30 1 1.9072 -4.3599 -1.0865 31 1 3.2872 -3.2364 -0.8866 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160584586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:05 Heat of formation + Delta-G solvation = -0.102980 kcal Electronic energy + Delta-G solvation = -15141.281634 eV Core-core repulsion = 12651.705237 eV Total energy + Delta-G solvation = -2489.576397 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.55192 -36.85528 -34.47639 -33.14488 -31.15466 -29.15673 -26.91643 -26.02014 -24.28945 -21.74317 -20.96994 -18.22173 -16.79548 -16.44875 -16.20112 -15.10647 -14.40408 -14.09200 -13.91993 -13.72523 -13.10819 -12.51480 -12.41217 -12.05920 -11.74707 -11.24801 -11.16462 -10.91977 -10.79776 -10.72931 -10.45587 -10.30104 -9.97329 -8.90170 -8.44446 -8.34237 -7.94789 -7.60122 -6.04227 -3.66243 3.25250 3.30292 3.34968 3.96288 4.21607 4.42047 4.87712 4.90009 5.01857 5.14534 5.33773 5.46309 5.65409 5.73322 5.88097 6.09909 6.23116 6.31757 6.53384 6.87817 7.11760 7.36232 7.45015 7.51574 7.65270 7.66318 7.80084 8.25284 8.68462 9.35316 9.66555 10.20809 10.84088 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052013 B = 0.009504 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.198506 B = 2945.517910 C = 3141.242930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.430 5.430 3 C -0.301 4.301 4 H 0.098 0.902 5 C 0.027 3.973 6 N -0.881 5.881 7 Si 0.927 3.073 8 H -0.275 1.275 9 H -0.285 1.285 10 H -0.274 1.274 11 C 0.451 3.549 12 O -0.591 6.591 13 C 0.109 3.891 14 N -0.818 5.818 15 C -0.110 4.110 16 C 0.034 3.966 17 N -0.650 5.650 18 C 0.025 3.975 19 H 0.075 0.925 20 H 0.065 0.935 21 H 0.041 0.959 22 H 0.263 0.737 23 H 0.343 0.657 24 H 0.332 0.668 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.329 0.671 30 H 0.030 0.970 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 -10.365 -1.602 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.146 5.146 3 C -0.429 4.429 4 H 0.116 0.884 5 C -0.175 4.175 6 N -0.522 5.522 7 Si 0.754 3.246 8 H -0.201 1.201 9 H -0.210 1.210 10 H -0.199 1.199 11 C 0.237 3.763 12 O -0.475 6.475 13 C 0.012 3.988 14 N -0.349 5.349 15 C -0.149 4.149 16 C -0.096 4.096 17 N -0.278 5.278 18 C -0.107 4.107 19 H 0.092 0.908 20 H 0.084 0.916 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.157 0.843 24 H 0.145 0.855 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.143 0.857 30 H 0.049 0.951 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.875 -8.919 -0.784 9.403 hybrid contribution 0.093 -0.658 -0.987 1.190 sum -2.782 -9.577 -1.771 10.129 Atomic orbital electron populations 1.22152 0.79697 1.00253 1.02515 1.43565 1.06556 1.04046 1.60448 1.19748 0.94102 0.82602 1.46498 0.88379 1.25296 0.95933 0.99583 0.96716 1.70173 1.09304 1.27050 1.45655 0.85990 0.78802 0.80841 0.78952 1.20085 1.21011 1.19938 1.19287 0.87342 0.83901 0.85727 1.90516 1.14174 1.86228 1.56629 1.21624 0.90222 0.94722 0.92210 1.59244 1.23085 1.44584 1.07967 1.22412 0.99200 0.96833 0.96419 1.22969 0.90195 0.96523 0.99900 1.63644 1.24963 1.23740 1.15493 1.23569 1.01054 0.95188 0.90890 0.90754 0.91614 0.94031 0.92631 0.84305 0.85464 0.90025 0.90337 0.90254 0.94749 0.85669 0.95137 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.35 8.03 59.85 0.48 2.83 16 2 N -0.43 -11.52 3.03 -122.19 -0.37 -11.89 16 3 C -0.30 -8.79 9.51 -14.93 -0.14 -8.94 16 4 H 0.10 3.00 7.25 -52.49 -0.38 2.62 16 5 C 0.03 0.74 5.36 -17.46 -0.09 0.64 16 6 N -0.88 -24.28 9.77 55.50 0.54 -23.74 16 7 Si 0.93 21.62 29.56 -169.99 -5.03 16.60 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.45 11.39 6.40 -10.98 -0.07 11.32 16 12 O -0.59 -17.07 15.24 5.55 0.08 -16.98 16 13 C 0.11 2.02 0.75 -131.37 -0.10 1.92 16 14 N -0.82 -12.71 5.97 0.93 0.01 -12.70 16 15 C -0.11 -1.85 5.30 -25.35 -0.13 -1.98 16 16 C 0.03 0.48 7.47 -2.18 -0.02 0.46 16 17 N -0.65 -10.47 7.62 -109.66 -0.84 -11.30 16 18 C 0.02 0.42 6.41 -2.18 -0.01 0.40 16 19 H 0.07 1.53 3.82 -51.93 -0.20 1.33 16 20 H 0.07 1.71 6.58 -51.93 -0.34 1.37 16 21 H 0.04 1.05 7.62 -51.93 -0.40 0.66 16 22 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.34 5.23 9.03 -39.29 -0.35 4.87 16 24 H 0.33 4.05 8.85 -39.29 -0.35 3.70 16 25 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 26 H 0.08 1.14 7.70 -51.93 -0.40 0.74 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.33 4.26 8.92 -39.29 -0.35 3.91 16 30 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.09 1.86 7.11 -51.93 -0.37 1.49 16 LS Contribution 248.99 15.07 3.75 3.75 Total: -1.00 -32.65 248.99 -5.87 -38.53 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -3.94 Total: 11.08 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.09 Total: 6.67 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.66 Total: -59.64 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.08 Total: -16.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.65 -5.87 -38.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.423 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds